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POTENTIAL USE OF ENDOPHYTIC BACTERIA TO CONTROL Pratylenchus brachyurus ON PATCHOULI Harni, Rita; Supramana, Supramana; Supriadi, Supriadi
Indonesian Journal of Agricultural Science Vol 13, No 2 (2012): October 2012
Publisher : Indonesian Agency for Agricultural Research and Development - MOA

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Abstract

Pratylenchus brachyurus is an important parasitic nematode which significantly decreases quality and quantity of patchouli oil. One potential measure for controlling the nematode is by using endophytic bacteria. These bacteria also induce plant growth. This study aimed to evaluate the potential of endo-phytic bacteria to control P. brachyurus. The experiments were carried out in the Bacteriological Laboratory of the Plant Protection Department, Bogor Agricultural University, and the Laboratory and Greenhouse of the Indonesian Spice and Medicinal Crops Research Institute from April to December 2007. Endophytic bacteria were isolated from the roots of patchouli plants sampled from various locations in West Java. Antagonistic activity of the isolates were selected against P. brachyurus and their abilities to induce plant growth of patch-ouli plants. Isolates having ability to control P. brachyurus and promote plant growth were identified by molecular techniques using 16S rRNA universal primers. The results showed that a total of 257 isolates of endophytic bacteria were obtained from patchouli roots and their population density varied from 2.3 x 102 to 6.0 x 105 cfu g-1 fresh root. As many as 60 isolates (23.34%) were antagonistic against P. brachyurus causing 70-100% mortality of the namatode, 72 isolates (28.01%) stimu-lated plant growth, 32 isolates (12.47%) inhibited plant growth, and 93 isolates (36.18%) were neutral. Based on their antago-nistic and plant growth enhancer characters, five isolates of the bacteria, namely Achromobacter xylosoxidans TT2, Alcaligenes faecalis NJ16, Pseudomonas putida EH11, Bacillus cereus MSK, and Bacillus subtilis NJ57 suppressed 74.0-81.6% nema-tode population and increased 46.97-86.79% plant growth. The study implies that the endophytic bacteria isolated from patchouly roots are good candidates for controlling P. brachyurus on patchouly plants. Bahasa IndonesiaPratylenchus brachyurus adalah nematoda parasit pada tana-man nilam yang dapat menurunkan hasil dan kualitas minyak nilam. Salah satu cara pengendalian yang potensial terhadap nematoda tersebut adalah menggunakan bakteri endofit. Selain dapat membunuh nematoda, bakteri endofit juga dapat meng-induksi pertumbuhan tanaman. Penelitian bertujuan untuk  mengevaluasi potensi bakteri endofit yang berasal dari tanaman nilam untuk mengendalikan namatoda parasit P. brachyurus. Penelitian dilakukan di Laboratorium Bakteriologi, Departemen Proteksi Tanaman, Institut Pertanian Bogor, serta di  laboratorium dan rumah kaca Balai Penelitian Tanaman Rempah dan Obat, pada bulan April sampai Desember 2007. Bakteri endofit diisolasi dari sampel akar tanaman nilam dari beberapa lokasi di Jawa Barat. Isolat-isolat bakteri endofit diseleksi kemampuannya untuk membunuh P. brachyurus dan menginduksi pertumbuhan tanam-an nilam. Isolat bakteri endofit yang potensial selanjutnya diidentifikasi secara molekuler menggunakan primer universal 16S rRNA. Penelitian memperoleh 257 isolat bakteri endofit dengan kerapatan populasi 2,3 x 102 sampai 6,0 x 105  cfu g-1 berat basah akar. Enam puluh isolat (23,34%) di antaranya bersifat antagonis terhadap P. brachyurus dengan mortalitas 70-100%, 72 isolat (28,01%) dapat memacu pertumbuhan tanaman nilam, 93 isolat (36,18%) bersifat netral, dan 32 isolat (12,47%) dapat menghambat pertumbuhan tanaman. Berdasarkan hasil peng-ujian antagonis dan pemacu pertumbuhan tanaman, lima isolat bakteri, yaitu Achromobacter xylosoxidans TT2, Alcaligenes faecalis NJ16,  Pseudomonas putida EH11, Bacillus cereus MSK, dan Bacillus subtilis NJ57 dapat menekan populasi nematoda 74,0-81,6% dan meningkatkan pertumbuhan nilam 46,97-86,79%. Penelitian mengindikasikan bahwa bakteri endofit dari tanaman nilam berpotensi mengendalikan P. brachyurus pada tanaman nilam.
EFFICACY OF ENDOPHYTIC BACTERIA IN REDUCING PLANT PARASITIC NEMATODE Pratylenchus brachyurus Harni, Rita; Supramana, Supramana; Supriadi, Supriadi
Indonesian Journal of Agricultural Science Vol 15, No 1 (2014): April 2014
Publisher : Indonesian Agency for Agricultural Research and Development - MOA

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Abstract

Pratylenchus brachyurus is a major parasitic nematode on patchouli that reduces plant production up to 85%. The use of endophytic bacteria is promising for controlling nematode and promoting plant growth through production of phytohormones and enhancing the availability of soil nutrients. The objective of the study was to evaluate the efficacy of endophytic bacteria to control P. brachyurus on patchouli plant and its influence on plant productions (plant fresh weight and patchouli oil). The study was conducted at Cimanggu Experimental Garden and Laboratory of the Indonesian Spice and Medicinal Crops Research Institute (ISMECRI), Bogor, West Java. The experi-ment was designed in a randomized block with seven treatments and eight replications; each replication consisted of 10 plants. The treatments evaluated were five isolates of endophytic bacteria (Achromobacter xylosoxidans TT2, Alcaligenes faecalis NJ16, Pseudomonas putida EH11, Bacillus cereus MSK and Bacillus subtilis NJ57), synthetic nematicide as a reference, and non-treated plant as a control.  Four-week old patchouli plants of cv. Sidikalang were treated by soaking the roots in suspension of endophytic bacteria (109 cfu  ml-1) for one hour before trans-planting to the field. At one month after planting, the plants were drenched with the bacterial suspension as much as 100 ml per plant. The results showed that applications of the endophytic bacteria could suppress the nematode populations (52.8-80%) and increased plant weight (23.62-57.48%) compared to the control. The isolate of endophytic bacterium Achromobacter xylosoxidans TT2 was the best and comparable with carbofuran.
PENGARUH METODE APLIKASI BAKTERI ENDOFIT TERHADAP PERKEMBANGAN NEMATODA PELUKA AKAR (Pratylenchus brachyurus ) PADA TANAMAN NILAM HARNI, RITA; MUSTIKA, IKA; SUPRAMANA, SUPRAMANA; MUNIF, ABDUL
Jurnal Penelitian Tanaman Industri Vol 12, No 4 (2006): DESEMBER 2006
Publisher : Pusat Penelitian dan Pengembangan Perkebunan

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.21082/jlittri.v12n4.2006.161-165

Abstract

ABSTRAKBakteri endofit adalah salah satu agen antagonis yang akhir-akhirini banyak digunakan sebagai pengendalian biologi nematoda parasittanaman. Pada tanaman nilam nematoda Pratylenchus brachyurus merupa-kan salah satu faktor yang dapat mempengaruhi produktivitas. Penelitianini bertujuan untuk mengetahui metode aplikasi bakteri endofit yangeffisien untuk menekan nematoda P. brachyurus pada tanaman nilam.Penelitian telah dilakukan di laboratorium dan rumah kaca Balai PenelitianTanaman Rempah dan Obat dan Laboratorium Nematologi DepartemenProteksi Tanaman IPB, dari Januari sampai dengan Juli 2005. Penelitianmenggunakan rancangan acak lengkap dengan 2 faktor. Faktor pertamaadalah metode aplikasi (siram dan rendam), faktor kedua adalah jenisisolat (NJ2, NJ25, NJ41, NJ46, NJ57, NA22, ERB21, ES32, E26). Hasilpenelitian menunjukkan bahwa populasi nematoda dipengaruhi olehadanya interaksi antara metode aplikasi dan isolat bakteri yang digunakan,sedangkan berat tajuk, panjang akar dan tinggi tanaman hanya dipengaruhioleh jenis bakteri. Isolat Bacillus NA22, Bacillus NJ46 dan Bacillus NJ2dengan metode perendaman akar mempunyai kemampuan yang tinggidalam menekan populasi P. brachyurus yaitu berturut-turut sebesar 75%,63% dan 60%. Semua isolat yang digunakan dapat meningkatkan berattajuk, panjang akar dan tinggi tanaman.Kata kunci: Nilam, Pogostemon cablin, penyakit tanaman, pengendalianbiologi, bakteri endofit, nematoda, Pratylenchus brachyurus,Jawa BaratABSTRACTEffect of application method of endophytic bacteria onroot lesion nematode (Pratylenchus brachyurus) onpatchouliEndophytic bacteria is one of the important agents recently usedfor controlling plant parasitic nematodes. P. brachyurus is one of thefactors affecting the productivity of patchouli (Pogostemon cablin Benth.)in Indonesia. The objectives of the research were to find out an efficientapplication method of endophytic bacteria to reduce P. brachyurus onpatchouli. The research was conducted in the Nematology Laboratory,Department of Plant Protection, Bogor Agricultural University and in theLaboratory and Greenhouse of Indonesian Spice and Medicinal CropsResearch Institute, from January to July 2005. The research usedrandomized complete design with two factors, the first factor wasapplication method (drencing and deeping), the second factor was bacteriaisolates (NJ2, NJ25, NJ41, NJ46, NJ57, NA22, ERB21, ES32, E26). Theresults showed that the population of nematode was affected by theinteraction between bacterial isolates and application method. While shootweight, root length and plant height were affected by bacterial isolates.Bacillus NA22, Bacillus NJ46 and Bacillus NJ2 applicated by deeping theroot into bacterial suspension significantly gave good result in reducing P.brachyurus, i.e. 75%, 63% and 60%. All bacterial isolates increased shootweight, root length.Key words: Patchouli, Pogostemon cablin, plant disease, biologicalcontrol, endophytic bacteria, nematode, Pratylenchusbrachyurus, West Java
Potential of Endophytic Bacterial to Control Lesion Nematode Pratylenchus brachyurus) on Patchouli RITA HARNI; ABDUL MUNIF; SUPRAMANA SUPRAMANA; IKA MUSTIKA
HAYATI Journal of Biosciences Vol. 14 No. 1 (2007): March 2007
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (42.874 KB) | DOI: 10.4308/hjb.14.1.7

Abstract

Root lesion nematode (Pratylenchus brachyurus) is one of the most important pathogens of patchouli that caused significant losses. Studies on the potential of endophytic bacterial to control P. brachyurus on patchouli had been conducted. To evaluate the effectiveness of endophytic bacterial against to P. brachyurus on patchouli, nine isolates of bacteria ( NJ2, NJ25, NJ41, NJ46, NJ57, NA22, ERB21, ES32, and E26) were applied by deeping root seedling into bacterial suspension. A study of the physiological characteristics of nine isolates was conducted by using specific medium. The results showed that endophytic bacterial was significantly reduced the population of P. brachyurus and all isolates bacterial promoted growth of patchouli (shoot weight, root weight, and root length). Four isolates, i.e. Bacillus NJ46, Bacillus Na22, Bacillus NJ2, and Bacillus NJ57 were among the potential control agents that reduced nematode populations as much as 68.1-73.9%. Almost all of the isolated bacteria from patchouli roots were able to solubilizing phosphate, while some of them had the ability to produce chitinase, cellulase, protease, HCN, and fluorescency. Key words: endophytic bacterial, Pratylenchus brachyurus, Pogostemon cablin, patchouli, nematode, biological control
Spesies Nematoda Puru Akar (Meloidogyne spp.) yang Berasosiasi dengan Penyakit Umbi Bercabang pada Wortel: Penyakit Baru di Indonesia . Supramana; Gede Suastika
Jurnal Ilmu Pertanian Indonesia Vol. 17 No. 2 (2012): Jurnal Ilmu Pertanian Indonesia
Publisher : Institut Pertanian Bogor

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Diseases and pests is one of the main obstacles in the cultivation of carrots in Indonesia. One of the emerging diseases that cause significant losses is branched (forked) tuber caused by root knot nematodes (RKN), Meloidogyne spp. Research aimed to identify the species of RKN was carried out by taking samples of diseased plants and soil from the carrot plantation in four vegetable production centers on the island of Java, namely: (1) District Pacet, Cianjur, West Java, (2) Dieng Plateau, Central Java, (3) Kopeng, Central Java and (4) District Bumiaji, Kota Batu, East Java. Three carrot plantations with different altitude / elevation were sampled for each area involved. NPA species identification was done by observation of perineal pattern (fingerprint-like pattern) of females and PCR of nematodes r-DNA ITS. Four Meloidogyne species, namely M. arenaria, M. hapla, M. incognita, and M. jananica, were identified from West Java, Central Java and East Java samples, whereas M. fallax found only in West Java.
Identifikasi Meloidogyne Penyebab Penyakit Umbi Bercabang pada Wortel di Dataran Tinggi Dieng Muhamad Taher; Supramana .; Gede Suastika
Jurnal Fitopatologi Indonesia Vol. 8 No. 1 (2012)
Publisher : The Indonesian Phytopathological Society (Perhimpunan Fitopatologi Indonesia)

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (658.899 KB) | DOI: 10.14692/jfi.8.1.16

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Branched tuber disease is a new problem on carrot cultivation in Indonesia. The disease may reduce the quantity and quality of the tubers and causing significant yield losses. Meloidogyne spp. has been identified as the primary cause of branched or forked disease of carrot in West Java. Similar disease was observed in carrot field in Dieng Plateau, Central Java. The study was conducted at three locations in the Dieng Plateau having different elevation. Nematode species identification was done by observing the perinneal pattern of 150 samples of female nematode and obtained four Meloidogyne species, namely M. arenaria, M. hapla, M. incognita, and M. javanica. All four species were found associated with branched tuber disease in three locations with M. incognita as a dominant species having prevalence levels of 50% to 58%.Key words: branched tuber disease, carrots, Meloidogyne, species identification
Identifikasi Spesies Meloidogyne spp. Penyebab Umbi Bercabang pada Tanaman Wortel di Jawa Timur Zalzilatul Hikmia Hikmia; Supramana .; Gede Suastika
Jurnal Fitopatologi Indonesia Vol. 8 No. 3 (2012)
Publisher : The Indonesian Phytopathological Society (Perhimpunan Fitopatologi Indonesia)

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (1002.756 KB) | DOI: 10.14692/jfi.8.3.73

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Branched tuber is a new disease in carrot cultivation in Indonesia and has caused big losses for farmers. In 2010, several species of root-knot nematodes, Meloidogyne spp., were reported as the primary cause of disease and the yield loss due to the disease in the region of Agropolitan-Cianjur, West Java, reached 15% to 95%. Symptoms of tuber branching has also been reported in one of the centers of vegetable production in East Java, in the subdistrict of Bumiaji, Kota Batu. Research aimed at identifying  Meloidogyne species on carrot was carried out on carrot plantation. The study consisted of two activities, i.e. surveillance and identification. Surveillance was carried out at three different altitudes/elevations, i.e. 1600 m, 1700 m and 1800 m asl (above sea level). Identification was done by PCR ITS r-DNA using multiplex primer for mix spesies identification of M. hapla, M. fallax, and M. chitwoodi and the spesific primer for identification of M. arenaria, M. incognita, and M. javanica. Identification based on ITS r-NA by PCR gave positive results for four species, namely M. hapla, M. arenaria, M. incognita, and M. javanica.Key words: branched tuber disease, carrot, Meloidogyne, PCR ITS r-DNA
Identifikasi Spesies Meloidogyne pada Wortel berdasarkan Sikuen Nukleotida Halimah Halimah; Supramana Supramana; Gede Suastika
Jurnal Fitopatologi Indonesia Vol 9 No 1 (2013)
Publisher : The Indonesian Phytopathological Society (Perhimpunan Fitopatologi Indonesia)

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (661.022 KB) | DOI: 10.14692/jfi.9.1.1

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Root-knot nematodes (RKN), Meloidogyne spp., were reported as the cause of carrot branched tuber on several vegetable production areas in Central and East Java. Species identification by molecular approach was conducted using infected carrot tubers from Agropolitan Cianjur, West Java. DNA was extracted from female nematodes and amplified using PCR with species specific primers (Fjav/Rjav for M. javanica, Far/Rar for M. arenaria, and Finc/Rinc for M. incognita) and multiplex primer (M. hapla, M. chitwoodi, and M. fallax). PCR product were sequenced without cloning. Based on nucleotide sequences, two species RKN were found associated with branched tuber disease of carrot in Agropolitan Cianjur, i.e M. javanica and M. hapla. Phylogenetic analysis showed that M. javanica from Cianjur was closely related to RKN from China with the homology level of 91.9%, whereas nucleotide sequence of M. hapla from Cianjur had high homology level (99.4% to 100%) with isolates from Swiss, USA, UK, and China.Key words: Meloidogyne hapla, M. javanica, phylogenetic, root-knot nematode
Deteksi dan Identifikasi Spesies Meloidogyne pada Tanaman Wortel dari Dataran Tinggi Malino, Gowa, Sulawesi Selatan Hishar Mirsam; Supramana Supramana; Gede Suastika
Jurnal Fitopatologi Indonesia Vol 11 No 1 (2015)
Publisher : The Indonesian Phytopathological Society (Perhimpunan Fitopatologi Indonesia)

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (614.003 KB) | DOI: 10.14692/jfi.11.1.1

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Meloidogyne spp. was reported as the cause of branched tuber disease on several carrot production areas in Java, Indonesia and may potentially cause yield loss. This research aimed to use morphological and molecular characters to detect and identify Meloidogyne species on carrot from Malino Highland, Sub-district of Tinggimoncong, District of Gowa, South Sulawesi. Morphological identification was done based on character of the female perineal pattern. Molecular identification was based on amplification of r-DNA by polymerase chain reaction technique using species specific primers (Fjav/Rjav for M. javanica, Far/Rar for M. arenaria, and Finc/Rinc for M. incognita) and multiplex primer (JMV1/JMVhapla/JMV2 for M. hapla, M. chitwoodi, and M. fallax).Two of Meloidogyne species, i.e. M. incognita and M. arenaria were detected associated with the incidence of carrot branched tuber. The specific primers amplified two DNA bands, i.e. ± 999 bp of M. incognita and ± 420 bp of M. arenaria, while multiplex primer was failed to amplify DNA bands. Nucleotide sequence analysis showed M. incognita isolate of Malino was closely related to M. incognita isolate from Bangka-Indonesia, China (isolate JS2), and Malaysia (isolates JIK4, FIK4, JIT19, and FIT19) with homology of 99.2–100.0%. The nucleotide sequences of M. arenaria from Malino was submitted to GenBank with accession number KP234264, which was the first nucleotide sequence data in GenBank.
Identifikasi Nematoda Parasit pada Tanaman Wortel di Dataran Tinggi Malino, Sulawesi Selatan Berdasarkan pada Ciri Morfologi dan Morfometrik Hishar Mirsam; Supramana Supramana; Gede Suastika
Jurnal Fitopatologi Indonesia Vol 11 No 3 (2015)
Publisher : The Indonesian Phytopathological Society (Perhimpunan Fitopatologi Indonesia)

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (428.018 KB) | DOI: 10.14692/jfi.11.3.85

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Plant-parasitic nematodes are important pests on carrot (Daucus carota) in Malino Highland. This research aimed to identify plant-parasitic nematodes on carrot. The identification was carried out based on the morphological and morphometric characters of second-stage juveniles that were extracted from soil samples. Nematodes were extracted using the flotation-centrifugation technique. Morphometric measurement included body length, stylet length, esophagus length from the basal knob to the esophagus end, tail length from the posterior end to the anus, anterior diameter, maximum body diameter, and posterior diameter. Three genera of plant-parasitic nematodes were identified as Meloidogyne, Rotylenchulus, and Pratylenchus.