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All Journal Depik Jurnal Ilmu-Ilmu Perairan, Pesisir dan Perikanan
Nebuchad Nezzar Akbar
Khairun University, Ternate
Earth & Planetary Sciences Education Engineering

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Keragaman Genetik Ikan Cakalang (Katsuwonus pelamis) di Perairan Laut Maluku Utara Nebuchad Nezzar Akbar; Rusmawati Labenua
Depik Vol 7, No 2 (2018): August 2018
Publisher : Faculty of Marine and Fisheries, Universitas Syiah Kuala

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (773.18 KB) | DOI: 10.13170/depik.7.2.11156

Abstract

Skipjack tuna is a migratory species that migrate globally throughout the ocean. The North Maluku Sea has a big potency on skipjack, this resource has been exploited intensively and gave the negative impact on skipjack population. The genetic data is one of the important information to strategy a better sustainable fisheries management. Hence, the aims of the study were to analyze the genetic diversity data in North Maluku Sea. The samples were collected from three locations, namely Morotai Island, South Halamera and Bacan. A total of 10 samples were collected from every location. The samples were extracted with Chelex 10%, and processing for PCR and sequencing.  The results showed that molecular characteristics in skipjack are 546 (bp). The genetic diversity was ranged from 0.800-1.000 with the total of 28 haplotypes of 30 samples. The genetic diversity is included in high/undisturbed criteria and showed the population still in stable condition.Ikan Cakalang merupakan migratori  spesies yang bermigrasi secara global di seluruh samudera. Potensi ikan cakalang sangat tinggi di perairan laut Maluku Utara. Pemanfaatan sumberdaya ikan cakalang sudah dilakukan lama dan terus menurus sehingga berdampak pada penurunan, oleh karena itu perlu segera dilakukan pengelolaan secara berkelanjutan. Data genetik merupakan salah satu informasi penting untuk menyusun rencana pengelolaannya di perairan laut Maluku Utara. Oleh karena itu penelitian ini bertujuan untuk melakukan analisis keragamana genetik ikan cakalang di perairan Maluku Utara. Sampel ikan diperoleh dari tiga lokasi, yaitu Pulau Moratai, Halamera Selatan dan Bacan, masing-masing lokasi dengan 10 sampel. Hasil penelitian diperoleh karakteristik molekuler pada ikan cakalang 546 (bp). Keragaman genetik ditemukan berkisar 0.800-1.000 dengan jumlah 28 jaringan haplotipe dari 30 sampel. Nilai keragaman genetik masuk dalam kriteria tinggi/baik, sehingga bisa dikatakan bahwa populasi ikan masih dalam kondisi stabil. 
Studi pendahuluan genetika populasi ikan tuna sirip kuning (thunnus albacares) dari dua populasi di laut Kepulauan Maluku, Indonesia Nebuchad Nezzar Akbar; Dian Pertiwi; Neviaty P. Zamani; Beginer Subhan; Hawis H. Madduppa
Depik Vol 9, No 1 (2020): April 2020
Publisher : Faculty of Marine and Fisheries, Universitas Syiah Kuala

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (451.737 KB) | DOI: 10.13170/depik.9.1.10585

Abstract

Abstract. Yellowfin tuna (Thunnus albacares) is a large pelagic fish that have high economic value and inhabits the Moluccas Sea, Indonesia. Tuna catches in the Moluccas sea was very high and might decrease the yellowfin tuna population in this region. The research on population genetic of yellowfin tuna is fundamental to answer the problem. This information can be used as baseline data for future management, utilization, and basis of genetic conservation. The objective of this research was to infer the genetic population structure of two populations (North Maluku and Ambon) in the Moluccas Sea, Indonesia. In total, 41 tissue samples from pectoral fins of yellowfin tuna were collected in this study (North Maluku 33 samples and Ambon 8 samples). The results showed that genetic distances were low between the two populations. Additionally, the comparison of genetic distance between the Moluccas population and Indian Ocean waters also showed no significant differences. The Fst analysis showed the high gene flow between these two populations. Furthermore, haplotype network analysis showed that these two populations were the panmixia population. The overall result showed that no refraction genetic in the yellowfin tuna population from two populations in the Moluccas Sea.Keywords: Haplotype, genetic distance, Moluccas Sea, index fixation analysis, yellowfin tuna, population genetic structure. Abstrak. Tuna sirip kuning (Thunnus albacares) merupakan jenis pelagis besar bernilai ekonomis tinggi yang hidup di perairan Laut Maluku, Indonesia. Tangkapan ikan tuna di Laut Maluku berstatus tinggi, sehingga dapat menurunkan jumlah populasi. Penelitian tentang genetika populasi ikan tuna sirip kuning penting dilakukan untuk menjawab permasalahan ini. Informasi ini dapat menjadi sumber data untuk pengelolaan, pemanfaatan dan pelestarian untuk konservasi genetik. Tujuan penelitian untuk mengetahui struktur populasi genetik pada dua populasi di Laut Maluku (Maluku Utara dan Ambon). Secara total, 41 sampel jaringan dari sirip pectoral Tuna sirip kuning dikumpulkan dalam penelitian ini (Maluku Utara 33 sampel dan Ambon 8 sampel). Hasil penelitian menemukan jarak genetik yang dekat antar kedua populasi. Perbandingan jarak genetik pada populasi Perairan Maluku dan Samudera Hindia tidak menunjukan perbedaan signifikan. Analisis fiksasi indeks (Fst) memperlihatkan aliran genetik kuat antar populasi. Analisis jaringan haplotipe menunjukan kedua populasi merupakan populasi panmiksia. Penelitian ini secara umum menunjukkan belum terjadi perubahan struktur genetik populasi ikan tuna sirip kuning pada dua populasi di Laut Maluku.Kata kunci: Haplotipe, jarak genetik, Laut Maluku, analisis fiksasi indeks, tuna sirip kuning, struktur populasi genetik.     
Keragaman Genetik Ikan Cakalang (Katsuwonus pelamis) di Perairan Laut Maluku Utara Nebuchad Nezzar Akbar; Rusmawati Labenua
Depik Vol 7, No 2 (2018): August 2018
Publisher : Faculty of Marine and Fisheries, Universitas Syiah Kuala

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13170/depik.7.2.11156

Abstract

Skipjack tuna is a migratory species that migrate globally throughout the ocean. The North Maluku Sea has a big potency on skipjack, this resource has been exploited intensively and gave the negative impact on skipjack population. The genetic data is one of the important information to strategy a better sustainable fisheries management. Hence, the aims of the study were to analyze the genetic diversity data in North Maluku Sea. The samples were collected from three locations, namely Morotai Island, South Halamera and Bacan. A total of 10 samples were collected from every location. The samples were extracted with Chelex 10%, and processing for PCR and sequencing.  The results showed that molecular characteristics in skipjack are 546 (bp). The genetic diversity was ranged from 0.800-1.000 with the total of 28 haplotypes of 30 samples. The genetic diversity is included in high/undisturbed criteria and showed the population still in stable condition.Ikan Cakalang merupakan migratori  spesies yang bermigrasi secara global di seluruh samudera. Potensi ikan cakalang sangat tinggi di perairan laut Maluku Utara. Pemanfaatan sumberdaya ikan cakalang sudah dilakukan lama dan terus menurus sehingga berdampak pada penurunan, oleh karena itu perlu segera dilakukan pengelolaan secara berkelanjutan. Data genetik merupakan salah satu informasi penting untuk menyusun rencana pengelolaannya di perairan laut Maluku Utara. Oleh karena itu penelitian ini bertujuan untuk melakukan analisis keragamana genetik ikan cakalang di perairan Maluku Utara. Sampel ikan diperoleh dari tiga lokasi, yaitu Pulau Moratai, Halamera Selatan dan Bacan, masing-masing lokasi dengan 10 sampel. Hasil penelitian diperoleh karakteristik molekuler pada ikan cakalang 546 (bp). Keragaman genetik ditemukan berkisar 0.800-1.000 dengan jumlah 28 jaringan haplotipe dari 30 sampel. Nilai keragaman genetik masuk dalam kriteria tinggi/baik, sehingga bisa dikatakan bahwa populasi ikan masih dalam kondisi stabil. 
Studi pendahuluan genetika populasi ikan tuna sirip kuning (thunnus albacares) dari dua populasi di laut Kepulauan Maluku, Indonesia Nebuchad Nezzar Akbar; Dian Pertiwi; Neviaty P. Zamani; Beginer Subhan; Hawis H. Madduppa
Depik Vol 9, No 1 (2020): April 2020
Publisher : Faculty of Marine and Fisheries, Universitas Syiah Kuala

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13170/depik.9.1.10585

Abstract

Abstract. Yellowfin tuna (Thunnus albacares) is a large pelagic fish that have high economic value and inhabits the Moluccas Sea, Indonesia. Tuna catches in the Moluccas sea was very high and might decrease the yellowfin tuna population in this region. The research on population genetic of yellowfin tuna is fundamental to answer the problem. This information can be used as baseline data for future management, utilization, and basis of genetic conservation. The objective of this research was to infer the genetic population structure of two populations (North Maluku and Ambon) in the Moluccas Sea, Indonesia. In total, 41 tissue samples from pectoral fins of yellowfin tuna were collected in this study (North Maluku 33 samples and Ambon 8 samples). The results showed that genetic distances were low between the two populations. Additionally, the comparison of genetic distance between the Moluccas population and Indian Ocean waters also showed no significant differences. The Fst analysis showed the high gene flow between these two populations. Furthermore, haplotype network analysis showed that these two populations were the panmixia population. The overall result showed that no refraction genetic in the yellowfin tuna population from two populations in the Moluccas Sea.Keywords: Haplotype, genetic distance, Moluccas Sea, index fixation analysis, yellowfin tuna, population genetic structure. Abstrak. Tuna sirip kuning (Thunnus albacares) merupakan jenis pelagis besar bernilai ekonomis tinggi yang hidup di perairan Laut Maluku, Indonesia. Tangkapan ikan tuna di Laut Maluku berstatus tinggi, sehingga dapat menurunkan jumlah populasi. Penelitian tentang genetika populasi ikan tuna sirip kuning penting dilakukan untuk menjawab permasalahan ini. Informasi ini dapat menjadi sumber data untuk pengelolaan, pemanfaatan dan pelestarian untuk konservasi genetik. Tujuan penelitian untuk mengetahui struktur populasi genetik pada dua populasi di Laut Maluku (Maluku Utara dan Ambon). Secara total, 41 sampel jaringan dari sirip pectoral Tuna sirip kuning dikumpulkan dalam penelitian ini (Maluku Utara 33 sampel dan Ambon 8 sampel). Hasil penelitian menemukan jarak genetik yang dekat antar kedua populasi. Perbandingan jarak genetik pada populasi Perairan Maluku dan Samudera Hindia tidak menunjukan perbedaan signifikan. Analisis fiksasi indeks (Fst) memperlihatkan aliran genetik kuat antar populasi. Analisis jaringan haplotipe menunjukan kedua populasi merupakan populasi panmiksia. Penelitian ini secara umum menunjukkan belum terjadi perubahan struktur genetik populasi ikan tuna sirip kuning pada dua populasi di Laut Maluku.Kata kunci: Haplotipe, jarak genetik, Laut Maluku, analisis fiksasi indeks, tuna sirip kuning, struktur populasi genetik.     
Co-Authors Beginer Subhan Dian Pertiwi Hawis H Madduppa Neviaty P Zamani Neviaty P. Zamani Rusmawati Labenua