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Variasi Genetik Itik Bayang Berbasis Marka Mikrosatelit Pada Lokus AY287 dan Lokus AY283 Rusfidra, Rusfidra; Heryandi, Y.; Jamsari, Jamsari; Rahman, E. Y.
Sains Peternakan: Jurnal Penelitian Ilmu Peternakan Vol 11, No 2 (2013): Sains Peternakan
Publisher : Universitas Sebelas Maret (UNS)

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.20961/sainspet.v11i2.4848

Abstract

West Sumatera Province has poultry genetic resource of local duck that potential in supplyeggs and duck meat. Bayang duck was set by Indonesian Agricultural Ministry in 2012 as national livestock breeds in Indonesia. Microsatellite markers are widely used as a genetic identifier because of their abundant existence, co-dominant and high polymorphic. The purpose of this study was to determine the genetic diversity of Bayang ducks based on two microsatellite loci which include AY287 and AY283. DNA substances used in the study were blood samples from 24 Bayang duck in Pesisir Selatan Regency. The isolated DNA genom from 24 blood samples of Bayang duck could be detected by gel electrophoresis. Results showed that AY287 locus has 6 alleles; allele A (108 bp), allele B (142 bp), allele C (183 bp), allele D (227 bp), allele E (272 bp) and allele F (340 bp). Both allele E and F were specific genetic markers of Bayang duck. Alleles frequencies of the AY287 locus were as follow: allele C (26,93%), allele D (19,24%), allele A (15,38%), allele B (15,38%), allele E (15,38%) and allele F (7,69%). The AY283 locus has 6 alleles consisted of allele A (230 bp), allele B (320 bp), allele C (345 bp), allele D (390 bp), allele E (450 bp) and allele F (500 bp). Allele frequencies of this marker were allele B (20,51%), allele D (20,51%), allele E (20,51%), allele A (15,39%), allele C (15,39%), and allele F (7,69%), respectively. Our finding suggest that two microsatellite markers, AY287 and AY283, were polymorphic in Bayang duck population.Key words: Bayang duck, microsatellite, AY283, AY287
OPTIMASI NUTRISI MEDIA PERTUMBUHAN BAKTERI TERMOFIL PENGHASIL SELULASE DARI SUMBER AIR PANAS RIMBO PANTI -, Armaini; Dharma, Abdi; Syukur, Sumaryati; -, Jamsari
Jurnal Riset Kimia Vol 5, No 1 (2011): September
Publisher : Universitas Andalas

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.25077/jrk.v5i1.165

Abstract

 Optimization have been done on the media for the growth of the isolated thermophiles bacteria from hot springs Rimbo Panti, the nutrients comprising variety of carbon sources such as CMC (carboxymethyl cellulose), avicell (micro crystalline cellulose), and cellobiose, with a variety of sources organic nitrogen, peptone, extracts yeast, tryptone, and urea, as well as variations consist of inorganic nitrogen sources, KNO3, NaNO3, (NH4)2SO4, and (NH4)NO3. Determination of cellulase activity performed using DNS reagent (3,5-dinitro salicylic acid). Maximum cellulase production with high activity based on the results of this research, the best of carbon source is CMC with optimum concentration 0.125%, inorganic nitrogen source is peptone with the optimum concentration of 0.3 to 0.4% and the inorganic nitrogen source is (NH4)2SO4 with optimum concentration of 0.2 - 0.25%. Optimization of size of inoculums obtained the optimum amount of inoculums 2%. Keywords: Optimization, thermophiles bacteria, cellulose, carbon sources, nitrogen sources
POTENSI BAKTERI ASAM LAKTAT DALAM MENGHASILKAN BAKTERIOSIN SEBAGAI ANTIMIKROBA DAN PENGUKURAN BERAT MOLEKULNYA DENGAN SDS-PAGE DARI ISOLAT FERMENTASI KAKAO -, Urnemi; Syukur, Sumaryati; Purwati, Endang; Ibrahim, Sanusi; -, Jamsari
Jurnal Riset Kimia Vol 4, No 2 (2011): March
Publisher : Universitas Andalas

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.25077/jrk.v4i2.141

Abstract

 ABSTRACTLactic acid bacteria (LAB) were isolated from cocoa beans fermentation Forestero variety from West Sumatera, that were eleven isolates. The isolates were tested to antimicrobial activity against pathogenic bacteria E.coli NBRC 14237, Staphylococcus aureus NBRC 13276, Bacillus subtilis BTCCB 612, listeria m. dan S. Typhii.Results the research showed that, isolates had inhibition zone to pathogenic bacteria, that were 7 mm till 12 mm at 48 hours observation. R2.4 isolate was most potential to inhibition zones growth pathogenic bacteria, That was 11mm till 12 mm to five pathogens. R2.4 isolates was the highest to against pathogenic bacteria (Bacillus subtilis BTCCB, Listeria monocytogenesis and Staphylococcus aureus NBRC) had inhibition zones, that was 12. mm till 48 hours. Listeria monocytogenesis had been known as pest bacterium of food born, so that R2.4 isolate can be used as food biopreservative. Crude of R2.4 isolate molecular weight was 10 kDa by SDS-PAGE.  Key words: Lactic acid bacteria, antimicrobial activity, SDS-PAGE, cocoa fermentation  and food biopreservative    
SKRINING DAN IDENTIFIKASI BAKTERI PENDEGRADASI INULIN DARI SUMBER AIR PANAS PADANG BALIMBIANG DI SOLOK Azhar, Minda; Syukur, Sumaryati; Natalia, Dessy; -, Vovien; -, Jamsari
Jurnal Riset Kimia Vol 5, No 1 (2011): September
Publisher : Universitas Andalas

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.25077/jrk.v5i1.175

Abstract

 ABSTRACT Thermophilic bacteria and thermotolerant bacteria are potential sources of thermostable of inulin degradating enzyme, an enzyme which converts inulin into fructose and FOS prebiotics. Isolation and identification of 16S rDNA gene inulin degradation bacteria from hot springs of Padang Balimbiang in Solok have been undertaken. Screening of inulin degradation bacteria was done using direct and undirect methods on medium with inulin or inulin-RBB as a sole carbon source. One inulin degradation bacteria have been obtained from 21 isolates. The isolate was designated as UBCT-030. The isolate is able to grow at temperature 23 °C to 60 °C. According to 16S rDNA gene analysis, phisiology and morphology bacteria on UBCT-030 isolate was identified as Bacillus subtilis.  Keywords: inulinase bacteria, hot springs, Bacillus subtilis, inulin, 16S rDNA gene
IDENTIFIKASI GEN PENYANDI PIREN DIOKSIGENASE PADA ISOLAT BAKTERI PENDEGRADASI PIREN Febria, FA; Jamsari, Jamsari; Nasir, N; Nurhidayat, N
BERITA BIOLOGI Vol 10, No 6 (2011)
Publisher : Research Center for Biology-Indonesian Institute of Sciences

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (340.231 KB) | DOI: 10.14203/beritabiologi.v10i6.1946

Abstract

The pyrene dioxygenase coded by gene is an indicator of bacterial isolates capabilities in pyrene degradation. The encoded gene of pyrene dioxygenase can be amplified and detected in Pseudomonas sp. PyrA2 and Burkholdoriasp. PyrA4 isolates, using primary specific Diox which designed based on PhdF gene sequence, the coding gene of pyrene dioxygenase in Mycobacterium vanbalenii PYR-1. The sequence alignment of pyrene dioxygenase putative gene in both of bacterial isolates with the sequence of pyrene dioxygenase coding gene in M. vanbalenii PYR-1 shows the similarity percentage of 41 % and 42% with Pseudomonas sp. PyrA2 and Burkholdoria sp.PyRA4.
POTENSI BAKTERI ASAM LAKTAT DALAM MENGHASILKAN BAKTERIOSIN SEBAGAI ANTIMIKROBA DAN PENGUKURAN BERAT MOLEKULNYA DENGAN SDS-PAGE DARI ISOLAT FERMENTASI KAKAO -, Urnemi; Syukur, Sumaryati; Purwati, Endang; Ibrahim, Sanusi; -, Jamsari
Jurnal Riset Kimia Vol 1, No 2 (2008): March
Publisher : Universitas Andalas

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.25077/jrk.v1i2.149

Abstract

ABSTRACT Lactic acid bacteria (LAB) were isolated from of cocoa beans fermentation Forestero variety from West Sumatera, that were eleven isolates. The isolates were tested to antimicrobial activity against pathogenic bacteria E.coli NBRC 14237, Staphylococcus aureus NBRC 13276, Bacillus subtilis BTCCB 612, listeria m. dan S. Typhii. Results the research showed that, isolates had inhibition zone to pathogenic bacteria, that were 7 mm till 12 mm at 48 hours observation. R2.4 isolate was most potential to inhibition zones growth pathogenic bacteria, that was 11mm till 12 mm to five pathogens. R2.4 isolates was the highest to against pathogenic bacteria (Bacillus subtilis BTCCB, Listeria monocytogenesis and Staphylococcus aureus NBRC) had inhibition zones, that was 12.00 mm till 48 hours. Listeria monocytogenesis had been known as pest bacterium of food born, so that R2.4 isolate can be used as food biopreservative. Crude of R2.4 isolate molecular weight was 10 kDa by SDS-PAGE.  Key words: Lactic acid bacteria, Antimicrobial activity, SDS-PAGE, Cocoa fermentation and food biopreservative                                                      
Induksi Kalus dengan BAP (Benzylaminopurin) dan IAA (Indoleacetic acid) pada Tanaman Cabai (Capsicum annuum L.) Lokal Genotipe Lotanbar Sumatera Barat Sihotang, Saipul; Renfiyeni, Renfiyeni; Suliansyah, Irfan; Jamsari, Jamsari
Agrotekma: Jurnal Agroteknologi dan Ilmu Pertanian Vol 3, No 2 (2019): Agrotekma: Jurnal Agroteknologi dan Ilmu Pertanian, Juni
Publisher : Universitas Medan Area

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (1129.053 KB) | DOI: 10.31289/agr.v3i2.2547

Abstract

This study was aimed to obtain the method in the study of callus induction of in vitro.  The research activities were carried out at Laboratory of Biotechnology, Faculty of Agrotechnology, Andalas University. This research used decriptive and experimental methods. One-way ANOVA analysis followed by Duncan’s test was used to determine significant differences (P ≤ 0.05). All statistical analysis were performed using the SPSS Ver. 23 statistical software package. The results showed that medium of callus induction is 4,0 mg/L BAP + 0,5 mg/L IAA with formation of callus (days), and average of callus formed, namely 4,33 days,  and 9,67 callus.
ISOLASI BAKTERI PROBIOTIK PENGHASIL PROTEASE DAN LAKTASE DARI FERMENTASI KAKAO VARIETAS HIJAU Utami, Lidya Sari; Syukur, Sumaryati; ., Jamsari
CHEMISTRY PROGRESS Vol 5, No 2 (2012)
Publisher : Sam Ratulangi University

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.35799/cp.5.2.2012.775

Abstract

Bakteri asam laktat (BAL) merupakan salah satu mikroorganisme yang terlibat pada fermentasi kakao. Bakteri ini umumnya dapat dimanfaatkan sebagai probiotik yang memberikan keuntungan bagi manusia seperti, menghambat pertumbuhan bakteri patogen, menghasilkan berbagai enzim untuk kesehatan pencernaan, contohnya, laktase dan protease. Tujuan penelitian ini adalah untuk mengisolasi, dan mengidentifikasi bakteri probiotik protease dan laktase dari hasil fermentasi kakao, sehingga nantinya dapat dijadikan sebagai sumber probiotik baru yang dapat digunakan dibidang kesehatan dan industri. Pulp kakao difermentasi selama 36 jam, suhu kamar pada media MRS Broth dan MRS agar didapatkan enam isolat bakteri. Bakteri yang didapatkan diuji ketahanan terhadap pH asam (pH 2, 2.5 dan 3), dan didapatkan empat bakteri yang dapat hidup pada kondisi asam, yang kemudian digunakan untuk uji antimikroba terhadap Escherichia coli ATCC 25922 dan Salmonella thypi NBRC14237. Zona hambat yang dihasilkan keempat isolat bakteri tersebut termasuk pada golongan yang sangat kuat kuat (20 mM). Media TSIA (Triple Sugar Iron Agar) digunakan pada uji laktase, hanya dua isolat yang mampu menghasilkan laktase. Kedua isolat tersebut selanjutnya digunakan pada uji protease, didapatkan satu isolat (G6) memiliki zona bening terbesar (15mm). Kadar protease dari isolat G6 diukur dengan metode Lowry, dan didapatkan kadar protease maksimum adalah 0,88mg/mL pada waktu inkubasi 18 jam. Identifikasi genomik (16SrRNA) menggunakan primer 9F dan 1541R diketahui bahwa isolat G6 memiliki kesamaan 86% dengan Lactobacillus brevis strain FE.Lacticacid bacteria(LAB) is a microorganisms involved in thefermentation of cocoa. These bacteria generally used as probiotics, because it has manybenefits forhumans, such as inhibitingthe growth ofpathogenic bacteria, and produce variousenzymes, such as, lactaseandprotease. The goal of this studywas toisolatedandidentified the probioticbacteria producing proteaseandlactase from fermentedcocoa as a new source ofprobiotics. Cocoa pulp fermented for 36 hours at room temperature, and the yields are six bacterial colonies which isolated on the MRS broth and MRS agar. The six isolates will be selected to resistance of acid pH (pH2; 2.5 and 3), then the bacteria were used to antimicrobials test for Escherichia coli ATCC 25922 and Salmonella typi NBRC14237. The yields showed that the inhibition zone (antimicrobial activities) of four isolates bacteria are powerful. TSIA medium (Triple Sugar Iron Agar)was used for lactase screening, and obtained two bacteria that produce lactase, then the isolates were tested for protease screening, and the yield is one isolate (G6) has a largest clear zone (15 mm). The Lowry method was used to determine of protease concentration, and the yield showed that maximum concentration of protease is 0.88mg/mL at 18 hours incubation time for isolate G6. The genomic identification of 16SrRNA used the 9F and 1541R primers resulted that the G6 isolate have 86% similarity with Lactobacillus brevis strain FE.
Identifikasi Molekuler Begomovirus Penyebab Penyakit Kuning Keriting pada Tanaman Cabai (Capsicum annum L.) di Sumatera Barat Trisno, Jumsu; Hidayat, Sri Hendrastuti; Jamsari, Jamsari; Habazar, Trimuri; Manti, Ishak
Jurnal Natur Indonesia Vol 13, No 1 (2010)
Publisher : Lembaga Penelitian dan Pengabdian kepada Masyarakat Universitas Riau

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (360.888 KB) | DOI: 10.31258/jnat.13.1.41-46

Abstract

Pepper plants showing Begomovirus-like symtoms, consisting of yellowing, leaf curling, and distortion, werecollected from fields located in the Padang, West Sumatra. The aim of this research is to identification ofbegomovirus associated with yellow leaf curl diseases on pepper. Total DNA was extracted from infected leaftissue according to Doyle and Doyle (1999) with slight modification. Polymerase chain reaction (PCR) was used toamplify the coat protein region of the virus using universal degenerate primers pAV494 and pAC1048. The PCRamplified DNA product (approx. 560 bp) was sequenced. The nucleotide and amino acid sequences and BLASTsearch revealed highest homology with pepper yellow leaf curl Indonesia virus isolated pepper, tomato andAgeratum conyzoides from Java, but differences from those of tomato yellow leaf curl virus. The isolate was thententatively called pepper yellow leaf curl Indonesia virus-Padang (PYLCIV-Pdg).
Inokulasi Fungi Mikoriza Arbuskula (FMA) Indigenus pada Bibit Jahe untuk Pengendalian Penyakit Layu Ralstonia solanacearum ras 4) Suharti, Netty; Habazar, Trimurti; Nasir, Nasril; Dachryanus, Dachryanus; Jamsari, Jamsari
Jurnal Natur Indonesia Vol 14, No 1 (2011)
Publisher : Lembaga Penelitian dan Pengabdian kepada Masyarakat Universitas Riau

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (49.568 KB) | DOI: 10.31258/jnat.14.1.61-67

Abstract

Bacterial wilt disease caused by Ralstonia solanacearum race 4 is one of factors inhibiting ginger production. The study on ArbuscularMychorrizae Fungus (AMF) in greenhouse was found could reduce of bacteria wilt disease. Experiment design of research was randomizedblock design using 8 isolates. The results showed that inoculation of Arbuscular Mychorrhizae Fungus isolated from healthy gingerrhizosphere as biological diseases control agents could reduces disease severity. Four isolate could reduced disease severity up to 100% andsupport plant growth and production. As the result the seedling formation increased by 50–150%, plant height 36.92–87.56%, the numberof leaf 61.94–162.22% and ginger yield 190.62–400% respectively, compared to the control.
Co-Authors , Gusmawartati , Nurainas -, Urnemi -, Vovien . Dachryanus Abdi Dharma Agustian Agustian Ahmad Denian Ali Rahmad Ali Rahmat Andani Eka Putra Andika Ade Saputra Andika Chandra Putra Arif Sardi Armaini - Arnim Arnim Asman Manaf Azhar, Minda Azmi Dhalimi Dachryanus, Dachryanus Delmi Sulastri DESSY NATALIA Djong Hon Tjong E. Y. Rahman E. Y. Rahman Efrida Efrida elara resigia Elly Syafriani Elvi Zuriyani Endang Purwati RN Eryka Okta Juanty FA Febria Fatchiyah Fatchiyah Febria, FA Femy Riwany fitri ekawati Friska Eka Fitria Hamda Fauza Hasbi Al Huda Herviyanti Herviyanti Ida Parwati Ifan Aulia Candra Irawati Chaniago Irfan Suliansyah Irwandi Irwandi ISHAK MANTI Ishak Manti Ishak Manti Istino Ferita Jeanne Venora Jumsu Trisno Lidya Sari Utami Lily Syukriani Lipoeto NI Liza Aulia Yusfi Meisilva Erona Meisilva Erona S Minda Azhar Mirnawati Mirnawati ML Edy Parwanto Muhamad Irsyad Murdaningsih H. Karmana N Nasir N Nurhidayat N Nurhidayat, N Nasril Nasir Nasril Nasir Nasrul Zubir Natalia, Dessy Nefilinda Nefilinda Netty Suharti Ningsih, Azma Risilvia Noraziyah Abd Aziz Shamsudin Nur Afrainin Syah Obel Obel Obel, Obel Rachmad Hersi Martinsyah Rahmad, Ali Rahmi Handayani Rahmi Kamelia Ramadhan, Nugraha Renfiyeni Renfiyeni Renfiyeni, Renfiyeni Renfiyeni, Renfiyeni Reni Koja Retno Ariza Soeprihatini Soemarwoto Rhenly Danis Rika Despica Rosadi, Firsta Ninda Roza Yunita Rusfidra rusfidra Sahrul Utama Saipul Sihotang, Saipul Salma Salma Sanusi Ibrahim Sarbaini Sarbaini Sartika, Diza Selvia Dewi Pohan Seswita, Seswita Silvia Permata sari Slamet Rianto SRI HENDRASTUTI HIDAYAT Sumaryati Syukur Syamsurizal Syamsurizal Syazili Mustofa Tika Runifah Trimuri Habazar TRIMURTI HABAZAR Urnemi - Urnemi Urnemi V. Maslami Vovien - Wardi, Epi Supri Wawan Abdullah Setiawan Winda Purnama Sari Winda Purnama Sari Y Heryandi Y. Marlida Y. S. Nur Yanwirasti Yanwirasti Yanwirasti Yuniar Lestari Yurnalis Yurnalis ZK Abdurahman Baizal Zulkarnain Chaidir