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Fathoni, A.
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Journal : Journal of the Indonesian Tropical Animal Agriculture

 1 
Identification of MC4R gene and its association with body weight and body size in Kebumen Ongole Grade cattle Maharani, D.; Fathoni, A.; Sumadi, S.; Hartatik, T.; Khusnudin, M.
Journal of the Indonesian Tropical Animal Agriculture Vol 43, No 2 (2018): June
Publisher : Diponegoro University

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14710/jitaa.43.2.87-93

Abstract

MC4R gene is known as an important candidate gene for the growth trait. The purpose of this research was to identify the MC4R gene in Kebumen Ongole grade cattle and examine its association with growth traits. Data of birth weight (BW), weaning weight (WW), birth body length (BBL), birth chest circumference (BCC), birth shoulder height (BSH), weaning body length (WBL), weaning chest circumference(WCC), weaning shoulder height (WSH) and average daily gain (ADG) were collected and used for analysis of MC4R gene. Sixty blood samples were collected for DNA isolation and PCR amplification. The single nucleotide polymorphisms (SNP) g.1133 C>G was used for genotyping by using PCR-RFLP methods. The frequenciy of G allele (0.59) was greater than C allele (0.41). The highest genotype frequencies have been detected in CG heterozygote animals (0.52) followed by GG (0.33) and CC (0.15) in homozygote animals. The results of Pearson ‘s Chi-square test indicated that the population was not deviate (P>0.05) from the Hardy-Weinberg equilibrium (HWE). The SNP g. 1133 C>G of MC4R gene indicated affecting high birth body length with GG genotype (P<0.05). In conclusion, the SNP g. 1133 C>G may can be a marker for birth body length of calf selection.
Breeding value of sires based on offspring weaning weight as a recommendation for selecting Kebumen Ongole Grade cattle Sumadi, S.; Fathoni, A.; Maharani, D.; Ngadiyono, N.; Widayati, D. T.; Noviandi, C. T.; Khusnudin, M.
Journal of the Indonesian Tropical Animal Agriculture Vol 42, No 3 (2017): September
Publisher : Diponegoro University

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14710/jitaa.42.3.160-166

Abstract

The objective of study was to estimate breeding value of sires of Kebumen Ongole grade cattle based on offsprings weaning weight. This research was carried out from August to December 2015 in Urut Sewu area, Kebumen. The calculation of genetic parameter estimation was heritability of weaning weight. The value of heritability was used to calculate the breeding value of sires based on offsprings weaning weight. Heritability was calculated using paternal half-sib correlation with the direct pattern variance analysis. Breeding Value (BV) of sire was calculated by absolute estimated breeding value. The materials used in this study included were data record during the last three years (2013-2015) consisted of 41 sires, 51 dams and 244 calves. Weaning weight data had been corrected based on age of dams, sex and weaning age of 120 days. The results showed that the heritability value of weaning weight was included in high category (0.36 ± 0.21). The highest BV was KJ.J608 (49.76) with a ratio of 231.45%. The results of this study were expected to be the basis recommendation for selecting sires in Kebumen.
Polymorphism of the SNP g. 1180 C>T in leptin gene and its association with growth traits and linear body measurement in Kebumen Ongole Grade cattle Fathoni, A.; Maharani, D.; Aji, R. N.; Choiri, R.; Sumadi, S.
Journal of the Indonesian Tropical Animal Agriculture Vol 44, No 2 (2019): June
Publisher : Diponegoro University

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14710/jitaa.44.2.125-134

Abstract

The aim of this study was to identify the polymorphism of leptin gene and its association with growth traits in Kebumen Ongole Grade cattle. One hundred blood samples were collected for molecular analysis. Polymorphism of the leptin gene was analyzed using Polymerase Chain Reaction - Restriction Fragment Length Polymorphism (PCR-RFLP) with HpyCH4V restriction enzyme and DNA sequencing. Association analysis of the leptin gene with growth traits was analyzed by T-test. The results showed that SNP g. 1180 C>T was found in the population.The SNP changed amino acid from arginine to cysteine. The SNP was significantly associated with a high chest circumference at weaning age in animal having CC genotype (P<0.05). There were two identified alleles, namely C and T, with frequencies were 0.885 and 0.115,respectively. The genotype frequencies of CC, CT and TT were 0.78, 0.21 and 0.01, respectively. Allelic and genotypic distribution in the studied population were in Hardy-Weinbergequilibrium. Animals with CC genotype had a higher circumference at weaning age (WCC) than those with CT genotype. In conclusion, SNP g. 1180 C> T in the leptin gene is potential as genetic marker for growth traits in Kebumen Ongole Grade cattle.
Predicting the age and weight at puberty of Ongole Grade cattle using nonlinear mathematical model in Kebumen Farmer Association Maharani, D.; Amrullah, A. H. K.; Widayati, D. T.; Sumadi, S.; Fathoni, A.; Khusnudin, M.
Journal of the Indonesian Tropical Animal Agriculture Vol 42, No 4 (2017): December
Publisher : Diponegoro University

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14710/jitaa.42.4.233-239

Abstract

This research is aimed to evaluate the nonlinear mathematical model in predicting the age and weight of Kebumen Ongole Grade (PO) cattle at puberty. The data used in this research was weight recordings of (768) PO cattle, ranging from calf (< 1 month) to adult (60 months), collected by Kebumen PO cattle Breeder Association (ASPOKEB) from 2013 to 2015. These cattle were reared by a group of farmers located in six sub-districts: Mirit, Lembu Purwo, Ambal, Puring, Petanahan, and Klirong in Kebumen district, Jawa Tengah Province. Brody, Bertalanfy, Logistic and Gompertz mathematical models were used to analyze the data. The analysis showed that the R2of the four models classify high in the category (R2 >0.70). Mature weight (A) of PO cattle predicted by Logistic (349 kg) and Gompertz (358 kg) were most appropriate. Out of the four models, the Logistic model was the most accurate in predicting the weight at puberty (174 kg) of PO cattle, but all observed cattle are still in the follicular phase.
Co-Authors Aji, R. N. Amrullah, A. H. K. C. T. Noviandi Choiri, R. D. T. Widayati Khusnudin, M. Maharani, D. N. Ngadiyono S. Sumadi T. Hartatik