Kinetik: Game Technology, Information System, Computer Network, Computing, Electronics, and Control
Vol. 5, No. 4, November 2020

XGBoost and Network Analysis for Prediction of Proteins Affecting Insulin based on Protein Protein Interactions

Mohammad Hamim Zajuli Al Faroby (Department of Mathematics, Faculty Science and Data Analytics, Institut Teknologi Sepuluh Nopember.)
Mohammad Isa Irawan (Department of Mathematics, Faculty Science and Data Analytics, Institut Teknologi Sepuluh Nopember)
Ni Nyoman Tri Puspaningsih (Department of Chemistry, Faculty Science and Technology, Universitas Airlangga)



Article Info

Publish Date
22 Nov 2020

Abstract

Protein Interaction Analysis (PPI) can be used to identify proteins that have a supporting function on the main protein, especially in the synthesis process. Insulin is synthesized by proteins that have the same molecular function covering different but mutually supportive roles. To identify this function, the translation of Gene Ontology (GO) gives certain characteristics to each protein. This study purpose to predict proteins that interact with insulin using the centrality method as a feature extractor and extreme gradient boosting as a classification algorithm. Characteristics using the centralized method produces  features as a central function of protein. Classification results are measured using measurements, precision, recall and ROC scores. Optimizing the model by finding the right parameters produces an accuracy of  and a ROC score of . The prediction model produced by XGBoost has capabilities above the average of other machine learning methods.

Copyrights © 2020






Journal Info

Abbrev

kinetik

Publisher

Subject

Computer Science & IT Control & Systems Engineering Electrical & Electronics Engineering Energy Engineering

Description

Kinetik: Game Technology, Information System, Computer Network, Computing, Electronics, and Control was published by Universitas Muhammadiyah Malang. journal is open access journal in the field of Informatics and Electrical Engineering. This journal is available for researchers who want to improve ...