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Identification of MADS-box Gene in Oil Palm (Elaeis guineensis Jacq.) Nawfetrias, Winda; Sobir,; Faizal, Irvan
Makara Journal of Science Vol. 20, No. 3
Publisher : UI Scholars Hub

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The bunch size represented by the fruit number is the main parameter of oil palm (Elaeis guineensis Jacq.) yield. The fruit number, which is determined during the initial phase of development, is related to various factors, including the genetic properties of the trees. Trees that have more pistillate flowers have more fruit. The diversity of MADS-box genes assumed can be used as a marker for trees that have a higher number of pistillate flowers. Therefore, the aims of this research were to isolate and identify the MADS-box genes from flowers of tenera oil palm using PCR techniques. The SQUAMOSA (SQUA) gene and the GLOBOSA (GLO) gene are members of the MADS-box genes family that are responsible for sepal, petal and stamen organ development. The genomic DNA of the staminate flowers of trees that have more staminate flowers (P1) and the genomic DNA of the pistillate flowers of trees that have more pistillate flowers (P2) were isolated using the CTAB+ PVP method. The CTAB+PVP method was more efficient for isolating pistillate flower genomic DNA than staminate flower genomic DNA. The genomic DNA of P1 and P2 was amplified with two primers: BMS and BMG. The BMS primers gave a PCR product size of 1250 bp for the genomic DNA of P1 and P2. Meanwhile, the BMG primers gave a PCR product size of 1250 bp and 1300 bp for P1 and P2, respectively. The PCR products were sequenced and analyzed for homology using the GenBank database. BLAST analysis showed the PCR products have high homology with the SQUA1 gene and the GLO2 gene. Alignment analysis showed that the DNA fragments amplified with the BMS primers of the P1 and P2 sequences have variations in the exons and introns, and the variations were observed only in the introns of the DNA fragments amplified with the BMG primers.
Identification of Quantitative Trait Loci (QTL) for Awn, Incomplete Panicle Exertion and Total Spikelet Number in an F2 Population Derived from A Backcross Inbred Line, Bio-148, and the Recurrent Parent, IR64 Herlina, Lina; Sobir,; Trijatmiko, Kurniawan Rudi
Makara Journal of Science Vol. 20, No. 1
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An F2 rice population developed from a cross between a backcross inbred line (BIO-148) and its recurrent parent (IR64) was used to identify quantitative trait loci (QTL) for awn, panicle exertion and total spikelet number. BIO-148 is a BC2F8 line derived from a cross between IR64 (a high-yielding lowland rice variety) and Gajah Mungkur (an upland tropical japonica rice variety). Two hundred plants were grown in the greenhouse, and their DNAs were isolated for genotyping using SSR markers. Panicle exertion was observed during the grain-filling stage. The awn length of the seed and the total spikelet number per panicle were observed after harvesting. A total of four QTLs were identified using single-marker regression with LOD>3, explaining 8.4-18.1% of phenotypic variation. A QTL for awn was identified on Chromosome 8. A QTL for incomplete panicle exertion was identified on Chromosome 4. Two QTLs for total spikelet number were identified on Chromosome 4, in which the BIO-148 allele contributed to a higher number of spikelets per panicle. The QTLs identified in this study will be useful in the improvement of yield potential for modern lowland indica rice varieties by harnessing the hidden useful alleles from upland tropical japonica rice varieties.
Leaf Trichome Morphology of Durio Kutejensis Landraces from Kalimantan Priyanti,; Chikmawati, Tatik; Sobir,; Hartana, Alex
Makara Journal of Science
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The leaf trichome morphology of 19 Durio kutejensis (lai) landraces was studied. The observation of cross- and paradermal sections of D. kutejensis leaves showed that all landraces have glabrous leaves on the adaxial surface, while their abaxial surfaces are covered by six trichome types, one glandular (one- or two-celled stalks with a spheroid multicellular glandular head) and five non-glandular (complex peltate, simple peltate, cushioned stellate, flat stellate, and four-armed stellate trichome with a central cushion). All landraces were rarely covered by glandular trichomes. The non-glandular trichomes are varied in type, density, number of layers, diameter, and shape and margin color of the complex peltate among landraces. One landrace comprises three non-glandular trichome types, while the other landraces consist of four or five non-glandular trichome types. The shapes and margin color of complex peltate trichomes of D. kutejensis are the specific characteristics which distinguish this species from the other Durio species, however these characteristics cannot be used to differentiate one D. kutejensis landraces from the other. Therefore, other characteristics need to be explored in order to distinguish one D. kutejensis landraces from the other.
Co-Authors ALEX HARTANA Irvan Faizal Kurniawan Rudi Trijatmiko, Kurniawan Rudi Lina Herlina Priyanti, TATIK CHIKMAWATI Winda Nawfetrias, Winda