Thesis feature at FILKOM Apps is a feature to help FILKOM academic community to do thesis exercising. Base on observation on document study we got many problems to resolve business process thesis feature, so It need more time to resolve every process. The activities are verification of study program academic, verification of thesis supervisor and publishing of letter of assignment. These problems can make some interruption of business process and delay the student to finished their thesis. We need an evaluation at business process of thesis feature. First step in this research is identification of business process and modelling of business process with process mining. Modelling of process business base from event log with Disco and ProM 6 so we get modelling in petri net. While process model based from Standard Operational Procedure (SOP) modelled with Yet Another Workflow Language (YAWL) in petri net format to check the suitability of business process model. Next step, we evaluate the business process using Failure Mode and Effect Analysis (FMEA). The final result of FMEA will be a Risk Priority Number (RPN). To get the RPN result, we do some evaluation at failure level, event level and detected level. Result of every level we got from statistic of discovery result, exploration of event log, and interview. RPN result the we got from multiple of 3 level. The result of evaluation of FMEA that RPN higher result at chief of study program delay to determine the second thesis supervisor, the exercise of P0 that can't do at the same time with both thesis supervisor, student can't meet in time to get P1 progress, and delay of exercise results seminar.
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