Agrikan: Jurnal Agribisnis Perikanan
Vol 16 No 1 (2023): Agrikan: Jurnal Agribisnis Perikanan

Bioinformatic Analysis of the Cytb Gene to Estimate the Domestication Potential of Mahseer Fish Genus Tor spp.

Jefri Permadi (Politeknik Muhammadiyah Magelang)
Dhuta Sukmarani (Universitas Muhammadiyah Magelang)
Yeni Rahayu (Institut Teknologi Sumatra)

Article Info

Publish Date
23 May 2023

Abstract

The purpose of this study is to estimate the population of fish of the genus Tor as a source of proper domestication. Bioinformatic analysis was carried out by extracting data from the NCBI gene bank and alignment of the Cytb gene sequences using the ClustalW program to further analyze the nucleotide characteristics using MEGA software, determining genetic variation using the dnasp5 software, and using median joining analysis to reveal the relationship between Tor fish haplotypes from different locations. The results obtained from this study show that the haplotype diversity values of fish of the genus Tor spp. in the domesticated farm population and the natural population are still high, namely 0.9 and 0.8, respectively, as well as the occurrence of haplotype groupings based on other population origins. Domestication of Tor genus fish can be sourced from domesticated farms, and the wild is still ideal because the haplotype diversity is still high.

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Journal Info
Agrikan: Jurnal Agribisnis Perikanan
Website

Abbrev

agrikan

Publisher

Universitas Muhammadiyah Maluku Utara

Subject

Agriculture, Biological Sciences & Forestry Chemical Engineering, Chemistry & Bioengineering Earth & Planetary Sciences Environmental Science

Description

Agrikan: Jurnal Agribisnis Perikanan, is a periodical journal as a means of scientific communication and disseminates research results. Field studies in agribusiness and fisheries, aquaculture, management and utilization of fisheries resources. Manuscripts in journals do not always reflect the ...