Nexus Kedokteran Translasional
Vol 4, No 2 (2015): Nexus Kedokteran Translasional

Molecular Docking Analysis of Estrogen Receptor α to Phytochemistries in Asteraceae Family Compared to Tamoxifen in Breast Cancer

Umam, Dzulfiar Nasir ( Sebelas Maret University)
Pesik, Riza Novierta (Unknown)
Kusumawati, Ratna (Unknown)



Article Info

Publish Date
07 Apr 2017

Abstract

Background:Tamoxifen is the first line hormonal therapy for Estrogen Receptor α(ERα) breast cancer. Some of phytochemistries pose anticancer activities. However, data of those from Asteraceae family in Indonesia are lacking. The aim of this research is to know the binding affinities and binding locations of phytochemistries in Asteraceae family from Indonesia compared to tamoxifen on ERα in breast cancer. Methods: This research wasa bioinformatic study. Subjects were3-dimensional structures ofERα, tamoxifen, and phytochemistries’s Asteraceae family obtained from Indonesian HerbalDB database, Pubchem Compound, and Protein Data Bank. Subjects were prepared by Chimera 1.10 and Open Babel. Tamoxifen was docked on ERα by AutoDock Vina to know its binding affinities of ligand-receptor complex, compared to the other chosen ligands. Binding locations of ligand-reseptor were visualized by Pymol 1.7.2. Results: The docking results showed four phytochemistries’s binding affinities whichwere stronger than tamoxifen (-9.6 kcal/mol), such as lappadilactone, friedelin, benperidol, and beta-amyrin. The visualization results showed that lappadilactone, friedelin, benperidol, beta-amyrin, taraxerol, andepifriedelanol had similar binding areas totamoxifen on ERα. Lappadilactone had hydrogen bond with Tyr526 and benperidol had hydrogen bond with Trp383 on ERα. Conclusions:Lappadilactone and benperidol have stronger binding affinities than tamoxifen and they have hydrogen bond with ERα, but not in active sites of ERα. Therefore, lappadilactone and benperidol may have ability to inhibit ERα activities computationally. Keywords: Estrogen receptor α, molecular docking, phytocemistry, tamoxifen.

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