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INDONESIA
Journal of Tropical Biodiversity and Biotechnology
Published by Universitas Gadjah Mada
ISSN : 25409573     EISSN : 25409581     DOI : -
Core Subject : Science, Agriculture, Social,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Environmental Science Immunology & microbiology
Journal of Tropical Biodiversity and Biotechnology (JTBB) is an authoritative source of information concerned with the advancement of tropical biology studies in the Southeast Asia Region. It publishes original scientific work related to a diverse range of fields in tropical biodiversity, functional biology, and biotechnology.
Arjuna Subject : -
Articles 20 Documents
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Search results for , issue "Vol 7, No 1 (2022): April" : 20 Documents clear
Biostratigraphy and Paleobathimetry Microfossil Foraminera in the Sentolo Formation on the Jambon Line, Bantul Regency, Special Region of Yogyakarta Province Citayana Fani Refalta; Donan Satria Yudha; Didit Hadi Barianto
Journal of Tropical Biodiversity and Biotechnology Vol 7, No 1 (2022): April
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.62239

Abstract

Foraminifera microfossils can be used to determine the age of rocks and the depositional environment of an area. The research location is part of Sentolo Formation. Our stratigraphic data located on the Jambon section, Bantul Regency, Special Region of Yogyakarta Province. The appearance of the research area is in the form of well-exposed and ideal cliffs and the lithology of the formation has the potential for rock content rich in foraminifera microfossils. This is the reason for the microfossil analysis of planktic and benthic foraminifera in the study area. The purpose of this study is to determine the age and depositional environment. The research method was carried out by measuring the stratigraphic sections, sampling, and doing paleontological analysis based on planktic and benthic foraminifera. The results showed that the biostratigraphy can be divided into Globigerina venezuelana Zone (N18) & the Globorotalia plesiotumida Zone (N19), as well as the paleobathimetry, belongs to upper - lower bathyal.
Herpetofaunal Assemblages in the Lowland Regions of Sumatera Barat Fitra Arya Dwi Nugraha; Fajar Kaprawi; Rijal Satria; Ahmad Muammar Kadafi; Ade Prasetyo Agung
Journal of Tropical Biodiversity and Biotechnology Vol 7, No 1 (2022): April
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.63820

Abstract

The habitat destruction and land-use changes caused the decline of animal composition in many tropical regions. Here, we study the diversity of herpetofauna in the lowland areas in Sumatera Barat, a midwestern province in Sumatera island, using a visual encounter survey method. The surveyed habitat included rubber plantations, streams, paddy fields, and peat swamps. We observed 338 individuals representing 44 species from 14 families of herpetofauna with almost 90% individuals were amphibians. Overall, the rubber plantations contained a higher number of species than other types of habitat. For amphibians, Ranidae and Dicroglossidae represented the first and the second highest both in the species and individual number. For reptiles, Agamidae and Colubridae or Gekkonidae accounted for the first and the second highest in the individual number while Colubridae and Scincidae consisted of the highest species number. Our data showed that the diversity index was mostly in moderate level except in paddy field. The species composition in rubber plantations were more similar to those of streams rather than paddy field or peat swamp Sago habitat. 
Aboveground Forest Carbon Stock in Protected Area: A Case Study of Bukit Tigapuluh National Park, Indonesia Arief Darmawan; Zulfira Warta; Elis Molidena; Alexandra Valla; Muhammad Iqbal Firdaus; Gunardi Djoko Winarno; Bondan Winarno; Teddy Rusolono; Satoshi Tsuyuki
Journal of Tropical Biodiversity and Biotechnology Vol 7, No 1 (2022): April
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.64827

Abstract

The role of protected areas has been expanded into climate change mitigation, specifically on Reducing Emissions from Deforestation and Forest Degradation (REDD+). A reliable and practical method for measuring, reporting and verifying carbon stock is an essential component for REDD+. This study aims to recognize the characteristic and estimate aboveground forest carbon (AGC) stock in the tropical protected tropical area using a combination of terrestrial forest inventory and spatial data. A 168 cluster plots totaling 33.6 hectares were taken proportionally based on the percentage of forest cover types (dryland primary natural forest/DPF and dryland secondary natural forest/DSF) using a traditional forest inventory method (more than 5 cm dbh). Results showed that Bukit Tigapuluh National Park secured a significant AGC stock which has been estimated to be 269.2 [247.07; 291.43] tC/ha or 35,823,639 [32,872,312; 38,774,966] tC in total, being stored in approximately 133,051 hectares of the tropical rain forest. This result was higher than other studies in non-protected areas but slightly lower than other studies within protected areas. This finding supported the argument that protected areas possess a higher figure of AGC stock than other forest management units. The high amount of forest carbon biomass in the protected areas shall be very important assets for conducting the role of conservation for REDD+. 
The Effect of Accumulation of Leaf Litters and Allelochemicals in the Soil to the Sustainability of the Newly Introduced Crop Plants I Gede Ketut Adiputra
Journal of Tropical Biodiversity and Biotechnology Vol 7, No 1 (2022): April
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.65227

Abstract

Indonesia is the second-largest vanilla production and the third-largest cocoa production in the world, but it sustained for a short period. The unsustainability of these crops is speculated to occur because of the change in leaf litter accumulation which affected the sustainability of soil organic carbon that plays an important role in maintaining soil health and fertility. To find out methods that could improve the sustainability of the production, a literature review was conducted. The articles, related to the sustainability of vanilla and cacao production, were collected using Google Scholar, Wiley Online Library, ResearchGate, and Google Chrome browser. Keywords were employed to find the articles includingsoil organic carbon, cocoa plantation, vanilla, leaf litter, and allelochemical. This current article review foundthat introducing crop by clearing of previously existing vegetation could severely reduce the rate of leaf litter accumulation.  Consequently, in a prolonged period, the soil organic carbon and soil fertility are very low and are unable to support the healthy growth and production of the crops.  To restore production, the plantation then is returned to more traditional agroforestry such as replanting shading trees and addition of mulch. However, in the higher density of canopy, the crop production is low attributed partly to the decreasing soil pH which increases the impact of allelochemical. This review concluded that the sustainability of leaf litter accumulation is crucial to maintain soil health, but mitigation is required to reduce the impact of allelochemical accumulation. 
Essential Oils Composition of Kaffir Lime (Citrus hystrix DC.) Collection of Bogor Botanic Gardens from Central Java and East Sumba Inggit Puji Astuti; Kartika Dyah Palupi; Frisca Damayanti
Journal of Tropical Biodiversity and Biotechnology Vol 7, No 1 (2022): April
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.66061

Abstract

The Bogor Botanical Gardens' Citrus hystrix collections from East Sumba and Central Java differ in morphology and fruit aroma compared to the common C. hystrix. Hence, this study aimed to determine the essential oils' compositions of C. hystrix originated from Central Java and East Sumba to further clarify these differences. Extraction of essential oils were done using hydro-distillation, and the chemical compositions were investigated using GC-MS. The main compound of the leaf oil from East Sumba and Central Java was Linalool and Citronellal, respectively. Meanwhile, the main constituents were almost identical for the fruit oils, namely L-β-Pinene, D-Limonene, and L-α-Terpineol. 
The Potential of Trichosanthes tricuspidata Lour. from Bangli, Baturiti, Bali for Free Radicals Scavenging Arrohmatus Syafaqoh Li'aini; Farid Kuswantoro; Aninda Retno Utami Wibowo; Cokorda Istri Meyga Semarayani; Putri Kesuma Wardhani
Journal of Tropical Biodiversity and Biotechnology Vol 7, No 1 (2022): April
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.66111

Abstract

In addition to the studies on potential medicinal uses of Trichosanthes, a screening on phytochemical compounds and antioxidants activity of Trichosanthes tricuspidata from Bangli, Baturiti, Bali, Indonesia, was conducted on its leaves, fruits, peels, and seeds. Qualitative phytochemical tests were conducted to find out the chemical constituents of T. tricuspidata, while its antioxidant activity was tested by applying DPPH (1,1-diphenyl-2-picrylhydrazyl radical) method. As a result, flavonoid, alkaloid, terpenoid, tannin, and saponin were present in all methanolic extracts of T. tricuspidata. Furthermore, the best antioxidant activity was exhibited by peel extract. After all, T. tricuspidata contains a prospective compound agent for medicinal use. 
Genetic Diversity of Elephant Foot Yam (Amorphophallus paeoniifolius) and Two Other Relatives from the Meratus Mountains of South Kalimantan, Indonesia Dindin Hidayatul Mursyidin; Muhammad Aldy Hernanda; Badruzsaufari Badruzsaufari
Journal of Tropical Biodiversity and Biotechnology Vol 7, No 1 (2022): April
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.66231

Abstract

Elephant foot yam (Amorphophallus paeoniifolius) is a tuber crop with high economic value, so it is very prospective to be developed. This study aimed to characterize and determine the genetic diversity and relationship of A. paeoniifolius and two other relatives from the Meratus Mountains of South Kalimantan, Indonesia, using the rbcL marker. Eight samples of A. paeoniifolius and three other ones (outgroups), two of A. muelleri and one of A. borneensis, were used in the study. The genetic diversity was determined using the nucleotide diversity index (π), whereas the phylogenetic relationships were reconstructed using the Maximum Likelihood (ML) and Neighbor-Joining (NJ) methods. The results show that this germplasm has a high diversity at an inter-species level of 0.95% and a low at intra-species (0.33%). The phylogenetic analyses revealed that Amorphophallus from this region separated into different clades, three for NJ and one for ML. In this case, A. paeoniifolius var. sylvestris from Bati-Bati, Tanah Laut is closely related to A. paeoniifolius var. hortensis from Marajai, Balangan. In conclusion, although Amorphophallus from the Meratus Mountains of South Kalimantan, Indonesia, shows a high diversity at an inter-species level, the phylogenetic analyses revealed a unique relationship. This finding is expected to be a reference in supporting efforts to conserve, cultivate, and utilize sustainable Amorphophallus, globally and locally, particularly for the Dayak Meratus community of the South Kalimantan, Indonesia. 
COI-Based DNA Barcoding of Selais Fish from Arut River, Central Kalimantan, Indonesia Tomi Kasayev; Tuty Arisuryanti
Journal of Tropical Biodiversity and Biotechnology Vol 7, No 1 (2022): April
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.66510

Abstract

Selais fish belongs to the family Siluridae consisting of 12 genera with 104 properly validated species. The human need for these fish has sharply increased due to the benefits provided, especially for consumption. However, morphologically the selais fish are slightly challenging to differentiate among other silurid fish for non-specialist experts. Thus, a DNA barcoding approach using the mitochondrial COI gene as a molecular marker in this study was applied to clarify a taxonomic position and classification species of selais fish from Arut River (Central Kalimantan, Indonesia) and was also to assembly fish COI database storage from Indonesia. In this research, the method used was a PCR (Polymerase Chain Reaction) method with a pair of universal barcoding primers, FishF2 and FishR2. Based on partial COI fragment-based DNA barcoding, the whole samples showed no sequence differences (only 1 haplotype) within the population and this confirmed that these fish only consisted of one identical species. Furthermore, phylogenetic analysis (NJ / ML / BI) revealed that selais fish in this study had a close genetic relationship with Ompok hypophthalmus compared to other Ompok groups. This relationship was supported by the genetic distance value not exceeding 3.6% and this evaluated the undetermined naming of the selais fish from Arut River which was previously still unclassifiable.
Genetic Diversity of Dicranopteris and Sticherus from Rokan Hulu, Riau Based on ISSR Marker Afni Atika Marpaung; Ratna Susandarini
Journal of Tropical Biodiversity and Biotechnology Vol 7, No 1 (2022): April
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.66552

Abstract

Genetic diversity of eleven taxa consisted of Dicranoperis speciosa, D. curanii, and D. linearis with seven varieties and Sticherus truncatus with two varieties from Rokan Hulu, Riau was analyzed using ISSR markers generated from 10 primers. Nine out of ten ISSR primers produced a high level of polymorphism, with six of them showed 100% polymorphism. The genetic similarity was calculated using Jaccard's similarity coefficient, and cluster analysis using the Unweighted Pair-Group Method with Arithmetic Mean. The result showed that the genetic similarity of the eleven taxa under study ranged from 0.377 to 0.627 indicated a moderate level of genetic diversity and the clusters did not separate Dicranopteris from Sticherus. 
Morphological Characterization and Seed Germination Study of Wild Banana Musa acuminata var. flava (Ridl.) Nasution Trimanto Trimanto; Elga Renjana; Dewi Ayu Lestari; Elok Rifqi Firdiana; Shofiyatul Mas’udah; Apriyono Rahadiantoro; Linda Wige Ningrum; Lia Hapsari
Journal of Tropical Biodiversity and Biotechnology Vol 7, No 1 (2022): April
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.66645

Abstract

Wild bananas provide important genetic materials for further banana improvement, therefore they need to be conserved and studied. This study aimed to describe morphological characteristics of plant and seed and also to study the seed germination of wild banana M. acuminata var. flava (Ridl.) Nasution. The morphological characteristics were observed descriptively by referring to the descriptor for banana. The internal and external morphology of the seeds were observed using a digital microscope. The germination testing was carried out by a completely randomized design, using fresh seeds extracted from a bunch of fruits with two ripeness levels i.e. fully-ripe (yellow peel) and under-ripe (green-yellow peel). The data resulted was then analyzed using an independent t-test. The results showed that M. acuminata var. flava is characterized as a perennial herb; pseudostem height ≥3 m; male bud like a top with prominent green-yellow bracts; fruit curved and tasted mild-sweet when ripe. The seed is angular with wrinkled surface, and dark brown-black color when ripe. The longitudinal section showed parts of the seeds comprising the seed coat, outer and inner integument, embryo, endosperm, chalazal mass, micropyle cap and channel. The seeds are classified as orthodox, with hypogeal type and gradual germination pattern. The seeds extracted from fully-ripe fruit germinated faster with higher germination percentage and growth variables (root number and plant height). Thus, it is suggested to use physiologically mature seeds (seeds from fully-ripe fruits) which should be separated from the seeds of under-ripe fruits to lower the heterogeneity. 

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