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All Journal HAYATI Journal of Biosciences Jurnal Ilmu-Ilmu Perairan dan Perikanan Indonesia Journal of Tropical Life Science : International Journal of Theoretical, Experimental, and Applied Life Sciences Jurnal Biologi Udayana Biota: Jurnal Ilmiah Ilmu-Ilmu Hayati Jurnal Kelautan : Indonesian Journal of Marine Science and Technology JURNAL ENGGANO Musamus Fisheries and Marine Journal Berkala Penelitian Hayati ACROPORA: Jurnal Ilmu Kelautan dan Perikanan Papua
Abdul Hamid A. Toha
Program Studi Manajemen Sumberdaya Perairan, Jurusan Perikanan Fakultas Perikanan Dan Ilmu Kelautan, Universitas Papua Jln.Gunung Salju Amban, Manokwari. Papua Barat, 9831
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Earth & Planetary Sciences Environmental Science Immunology & microbiology Materials Science & Nanotechnology Medicine & Pharmacology Other

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Spatial Distribution and Genetic diversity of Tripneustes gratilla in Ambon Island Silahooy, Veince Benyamin; Hakim, luchman; Toha, Hamid; ., widodo
Journal of Tropical Life Science Vol 3, No 3 (2013)
Publisher : Journal of Tropical Life Science

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Abstract

Tripneustes gratilla an important ecological role in various habitats because T. gratilla is directly or indirectly recycling key from the nutrients in the waters of Ambon Island. Ambon Island has a distinctive topography, thus causing inhibition of water exchange period naturally in Ambon Bay and feared to complicate the exchange of genes between populations thus causing inbreeding. In addition the increasing environmental pollution can narrow the habitat of Tripneustes gratilla. Therefore, this study aims to determine the spatial distribution and genetic diversity of sea urchins (Tripneustes gratilla) on Ambon island based on cytochrome c oxidase subunit 1 gene. Alignment results showed the presence of genetic variation of T. gratilla on the Ambon island. This is shown in several polymorphic base where there has tranversi experience, transition, and insertion. COI gene sequence similarity values of T. gratilla on Ambon island is around 98.4 to 100%. Distribution of T. gratilla population found on Ambon island generally have a relatively small number of individuals. From four locations that just only one location have large enough number of individuals. However, the results of genetic analysis using COI gene showed the presence of genetic closeness between T. gratilla despite located in different locations.
Genetic Diversity and Connectivity of Sea Urchin Tripneustes gratilla in Region Surrounding Cenderawasih Bay, Papua-Indonesia and Indo-Pacific Abdul Hamid A. Toha; Ambariyanto Ambariyanto; Widodo Widodo; Luchman Hakim; Sutiman B. Sumitro; Agustina L. N. Aminin
HAYATI Journal of Biosciences Vol. 29 No. 2 (2022): March 2022
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.29.2.155-163

Abstract

Cenderawasih Bay has extremely high biodiversity with an enormous amount of endemic species due to geography isolation. Tripneustes gratilla is one of the species that is abundant in the bay. The species has ecological value that is suitable for bio-indicators of the environmental condition. Since the Bay relatively isolated area, then we examined the impact of the geographical conditions on genetic diversity and connectivity of Tripneustes gratilla among populations in the region surrounding Cenderawasih Bay based on the mitochondrial cytochrome c-oxidase-1 gene. Results of the study showed that genetic variation of the species within the population is high; despite the genetic variation among populations was low. The data suggested that the entire population of T. gratilla were closed connected, homogeneous, and shared polymorphic profile. Then we assumed the gene flow occurred for a long time among populations without geographical barriers. This information is a warrant to develop an effective strategy to maintain biodiversity in the Cenderawasih Bay.
MANFAAT BULU BABI (ECHINOIDEA), DARI SUMBER PANGAN SAMPAI ORGANISME HIAS Abdul Hamid A. Toha
Jurnal Ilmu-Ilmu Perairan dan Perikanan Indonesia Vol. 13 No. 1 (2006): Juni 2006
Publisher : Institut Pertanian Bogor

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Abstract

Bulu babi adalah hewan avertebrata laut. Para ahli mengelompokkan organisme ini dalam Filum Echinodermata. Menurut Aziz (1993) di Perairan Indonesia terdapat sekitar 84 jenis bulu babi. Organisme ini memiliki beragam fungsi. Sebagian dapat berfungsi sebagai bahan pangan, ada yang berguna dalam ekologi, ekonomi dan sifat racun. Sebagian lain berfungsi sebagai organisme model, untuk pengobatan penyakit pada manusia dan digunakan sebagai hewan hias.Kata kunci: bulu babi, bahan pangan, manfaat ekologi, nilai ekonomis, sifat racun, hewan hias.
STRUKTUR KOMUNITAS BULU BABI (Echinoidea) DI ZONA INTERTIDAL PERAIRAN MANOKWARI Jenly Haurissa; Lutfi Lutfi; Abdul Hamid A. Toha
Jurnal Kelautan Vol 14, No 2: Agustus (2021)
Publisher : Department of Marine Sciences, Trunojoyo University of Madura, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.21107/jk.v14i2.10834

Abstract

ABSTRACTSea urchins (Echinoidea) are spread from shallow intertidal areas to the deep sea. This study aims to determine species diversity and abundance of sea urchins in the intertidal zone of Manokwari Waters. The study took place in three locations in the intertidal zone of Manokwari waters. The method used was purposive sampling with a line transect sampling technique measuring 1x1 meter in size. We found 10 species namely H. mammilatus, E. mathaei, E. oblonga, E. viridis, E. lucunter, D. setosum, E. calamaris, D. savignyi, Echinotrix sp., and E. diadema. Sea urchin (H ') index value ranges from H’= 0.2173–0.448430; Index (E) ranges between 0.3108–0.7477 and the Index Value (C) ranges between 0.3769-0.7911 in each of the intertidal zones. L1 (Di = 0.5 ind / 6m2 - 21.8 ind / 6m2); KR = (2.0270%–88.5135%); L2 (Di = 0.5 ind / 6m2–9.5 ind / 6m2; KR = 0.8474% -48.3050%) and L3 (Di = 0.8 ind / 6m2–7.1 ind / 6m2; KR = 7.6923% -66.1538%).Keywords: Abundance, Intertidal, Manokwari, Sea Urchin, Species Diversity,ABSTRAKBulu babi (Echinoidea) tersebar di daerah pasang surut yang dangkal hingga laut dalam. Penelitian ini bertujuan untuk mengetahui keanekaragaman jenis dan kelimpahan bulu babi di zona intertidal. Penelitian dilakukan pada tiga lokasi di Perairan Manokwari. Metode yang digunakan adalah purposive sampling dengan teknik line transect sampling berukuran 1 × 1 meter. Kami menemukan 10 spesies yaitu H. mammilatus, E. mathaei, E. oblonga, E. viridis, E. lucunter, D. setosum, E. calamaris, D. savignyi, Echinotrix sp., dan E. diadema. Nilai indeks bulu babi (H') berkisar dari H' = 0,2173–0,448430; Indeks (E) berkisar antara 0,3108–0,7477 dan Nilai Indeks (C) berkisar antara 0,3769–0,7911. Kelimpahan mutlak dan relatif pada setiap lokasi adalah: L1 (Di = 0,5 ind/6m2 - 21,8 ind/6m2); KR = (2,0270% - 88,5135%); L2 (Di = 0,5 ind/6m2–9,5 ind/6m2; KR = 0,8474% -48.3050%) dan L3 (Di = 0,8 ind/6m2–7,1 ind/6m2; KR = 7.6923% -66,1538%).Kata Kunci: Bulu Babi, Intertidal, Keanekaragaman Jenis, Kelimpahan, Manokwari
DNA barcoding pada invertebrata laut Agus Mohammad Hikam; Nurul Jadid Mubarakati; Muhammad Dailami; Abdul Hamid A. Toha
Jurnal Biologi Udayana Vol 25 No 1 (2021): JURNAL BIOLOGI UDAYANA
Publisher : Program Studi Biologi, Fakultas Matematika dan Ilmu Pengetahuan Alam, Universitas Udayana

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24843/JBIOUNUD.2021.v25.i01.p06

Abstract

A large number of species of marine invertebrates that have similar morphology cause misidentification very possible. Molecular species identification is important in taxonomy study accurately. This study aims to determine the identity of Aquatic Papua marine invertebrates with DNA barcoding technique using markers COI gene (Cytochrome c oxidase I). The study identified 29 individuals of marine invertebrates, which came from sea cucumbers (6 samples), lobsters (6 samples), octopus (6 samples), chitons (5 samples), and sea urchins (6 samples). Molecular identification methods consist of DNA isolation, PCR COI gene fragments, sequencing, and DNA sequence analysis using bioinformatics software. The results showed that the sea cucumber came from the Bohadschia marmorata species, the lobster came from the Panulirus versicolor species, the octopus came from the Octopus cyanea species, the chiton came from the Ischnochitonaustralis species, and the sea urchins came from the Tripneustesgratilla species. The similarity of samples and references are in the range of 84.58 to 100.00%. The disparity index, genetic distance, and phylogenetic tree supported this result.
Keragaman Genetik Bulu Babi (Echinoidea) Abdul Hamid A. Toha
Biota : Jurnal Ilmiah Ilmu-Ilmu Hayati Vol 12, No 2 (2007): June 2007
Publisher : Universitas Atma Jaya Yogyakarta

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24002/biota.v12i2.2669

Abstract

Bulu babi adalah hewan Avertebrata laut yang kaya manfaat. Organisme yang tergolong dalam kelas Echinoidea ini dapat dimanfaatkan sebagai sumber pangan bergizi (Darsono & Sukarno, 1993; Nontji, 2002), berguna dalam ekologi (Lawrence, 1975; Lang & Schroeter, 1976), dan bernilai ekonomis penting. Bulu babi juga berfungsi sebagai organisme hiasan dan digunakan dalam bidang kesehatan untuk pengobatan penyakit (Angka & Suhartono, 2000). Beberapa ahli menggunakan bulu babi sebagai salah satu organisme paling populer untuk mempelajari biologi reproduksi (Vacquier et al., 1995), embriologi (Davidson et al., 1998; Lee et al., 1999), toksikologi (Dinnel et al., 1989), regulasi gen (Davidson et al., 2002), dan biologi evolusi (Peterson et al., 2000).
GENETIC OF Panulirus versicolor LOBSTER IN CENDRAWASIH BAY PAPUA AND LOMBOK WATERS WEST NUSA TENGGARA Bayu Pranata; Abdul Toha Hamid Toha; Duaiht Kolibongso
JURNAL ENGGANO Vol 5, No 2
Publisher : Universitas Bengkulu

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.31186/jenggano.5.2.249-257

Abstract

The purpose of this study was to determine the level of diversity and genetic relationship of Panulirus versicolor lobsters in Cenderawasih Bay and Lombok waters based on the cytochrome oxidase I (COI) gene. The results showed the level of genetic diversity of the two populations was very high and generally did not differ greatly between populations. We identified 6 haplotypes for P. versicolor lobster populations from Cenderawasih Bay and 7 haplotypes for P. versicolor lobster populations from Lombok waters. Network analysis shows that several P. versicolor lobster individuals from the Cendeawasih Bay and Lombok waters had similar haplotypes. The population of Cenderawasih Bay with Lombok waters was closely related to the average genetic distance value P-distance 0.005 (s.d 0.001) and the results of phylogenetic tree reconstruction showed that the two populations of P. versicolor lobsters form a monophyletic clade (close relatives).
GENETIC ASPECTS OF THE COMMERCIALLY USED SEA URCHIN Tripneustes gratilla Abdul Hamid A. Toha; Robi Binur; Suhaemi Suhaemi; Lutfi Lutfi; Luchman Hakim; Nashi Widodo; Sutiman B. Sumitro
JURNAL PENELITIAN BIOLOGI BERKALA PENELITIAN HAYATI Vol 20 No 1 (2014): December 2014
Publisher : The East Java Biological Society

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (222.188 KB) | DOI: 10.23869/112

Abstract

Tripneustes gratilla is economically important, supports small-scale, commercially important, ecological values, a prospect as a biological control agent and also considered as the commercially traded sea urchin. We review genetic aspects of T. gratilla for understanding the status to the sustainable use in the future. In GenBank, there are 267 nucleotide sequences related with T. gratilla. Most of the sequences (189 sequences) are COI gene of T. gratilla from Indo-Pacific Ocean. Study on molecular genetics mentioned that there is no genetic structure for T. gratilla distribution in Indo-Pacific Ocean including in Indonesia waters.
Diversity and Abundance of Plankton in Mangrove Waters Yonavin Maryon Titaley; Abdul Hamid A. Toha; Ricardo F. Tapilatu
Musamus Fisheries and Marine Journal Volume 3 Number 2, April 2021
Publisher : Faculty of Agriculture Musamus University

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.35724/mfmj.v3i2.3451

Abstract

The mangrove forest is an environment that is very rich in nutrients and it becomes an important element for plankton growth. This article aims to determine the diversity and abundance of plankton species in the mangrove area. The method used in this writing is a literature study, by exploring written sources in the form of books, articles, journals, or other documents relevant to the problem being presented. The information obtained from the literature study can be used as a reference to strengthen the existing arguments. The results of the writing show that the abundance and diversity of plankton in mangrove waters are strongly influenced by the physical and chemical conditions of the water, local conditions, tides, zoning, and mangrove density. In general, phytoplankton from the Bacillariophyceae class dominate mangrove waters compared to zooplankton. A mangrove forest management strategy needs to be implemented so that it can function for organisms and the surrounding environment.
Identifikasi Genetik Ikan Teri dari Teluk Cenderawasih dengan pendekatan DNA Barcoding Muhammad Dailami; Yuni Widyawati; Abdul Hamid A. Toha
Musamus Fisheries and Marine Journal Volume 3 Number 2, April 2021
Publisher : Faculty of Agriculture Musamus University

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.35724/mfmj.v3i2.3521

Abstract

The Cenderawasih Bay is a marine habitat for whale sharks (R. typus) which appear almost all year round. The appearance of this whale shark is triggered by various factors, including the food. Anchovy is one of the attractions for the emergence of whale sharks, so it is necessary to conduct genetic, biological and ecological studies. Anchovy has a small in size, making it difficult to identify morphologically. The purpose of this study was to genetically identify anchovy samples obtained from Cenderawasih Bay and compare the sequences with the GenBank database. The COI gene fragments were amplified by PCR method, using primer jg-LCO and jg-HCO. Sequencing is carried out from two directions, forward and reverse with the sanger termination dideoxy method. The resulting DNA sequence has a length of 669 base pairs encoding 223 amino acids. The results of homological comparisons with the NCBI and BOLD System databases show that this sample has similarities to the COI sequence of Spratelloides gracilis with a similarity number up to 99%. The results of the phylogenetic tree analysis showed that the anchovy samples from Cenderawasih Bay were in one clade with S. gracilis from Japan and separated from the clade of S. gracilis from the Red Sea, with a distance between clades is 0.104. This result is in line with the identification by homological comparison in the NCBI and BOLD System.
Co-Authors Agus Mohammad Hikam Agustina L.N. Aminin Ambariyanto Ambariyanto Bayu Pranata Duaiht Kolibongso Emmanuel Manangkalangi Fanny Fransina Carolina Simatauw Fitriyah I.E Saleh Jamhari Jamhari Jenly Haurissa Luchman Hakim Lutfi Lutfi Lutfi Lutfi Mudjirahayu Mudjirahayu Muhammad Dailami Muhammad Dailami Nashi Widodo Nurul Jadid Mubarokati Ricardo Ferdinand Tapilatu Robi Binur Suhaemi Sutiman B. Sumitro Sutiman B. Sumitro Tasya M.R. Sihabudin Tutik Handayani Veince Benyamin Silahooy, Veince Benyamin Vera Sabariah Widodo Widodo Yohanes Aibesa Yonavin Maryon Titaley Yuli E. Demana Yuni Widyawati