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All Journal HAYATI Journal of Biosciences Jurnal Pengolahan Hasil Perikanan Indonesia Jurnal Sumberdaya Hayati
Puji Rianti
Primate Research Center, Bogor Agricultural University, Bogor 16151 Department Of Biology, Faculty Of Mathematics And Natural Sciences, Bogor Agricultural University, Darmaga Campus, Bogor 16680
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Earth & Planetary Sciences Immunology & microbiology

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Diversity and Effectiveness of Insect Pollinators of Jatropha curcas L. (Euphorbiaceae) Puji Rianti; Bambang Suryobroto; Tri Atmowidi
HAYATI Journal of Biosciences Vol. 17 No. 1 (2010): March 2010
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (57.679 KB) | DOI: 10.4308/hjb.17.1.38

Abstract

Seed of Jatropha curcas (Euphorbiaceae) is currently established as the source for biofuel Therefore, it is important to understand the diversity insects that pollinated J. curcas inflorescence yellow flowers. We also aimed to study the pollination effects on fruit set on J. curcas. Scan sampling method were carried out to explore the insect pollinators diversity from 07.00 up to 17.00 h  in every 15 minutes. Visiting frequency of pollinators insects were observed by using focal sampling. Those information together with flowering periods, flower nectar volumes, and environmental factors were used as the basic data to determine the effectiveness of insect pollination both in covered and uncovered of seed set plants. Results showed that nine species of insect pollinators were from three order (Hymenoptera, Lepidotera, and Diptera) pollinated J. curcas. Four species of Hymenoptera i.e. Prenolepis, Apis dorsata, Xylocopa confusa, and Apis cerana showed  the highest abundances. The highest abundance and species richness of pollinators occurred at 08.00-10.15 and 15.00-17.15 h. Bees of X. confusa, A. cerana, and A. dorsata of Apidae are effective as insect pollinators in J. curcas plantations, due to high visited frequencies. The insect pollinators also increased fruits and seeds set of J. curcas in the uncovered experiment plants. Thereby, enhancement the three pollinator insects as part of crop management have to be considered by farmers.
Identification of Diagnostic Mitochondrial DNA Single Nucleotide Polymorphisms Specific to Sumatran Orangutan (Pongo abelii) Populations Puji Rianti; Dyah Perwitasari-Farajallah; Dondin Sajuthi; Joko Pamungkas; Alexander Nater; Michael Krützen
HAYATI Journal of Biosciences Vol. 22 No. 4 (2015): October 2015
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (1662.775 KB) | DOI: 10.4308/hjb.22.4.149

Abstract

The hypervariable region I of mitochondrial DNA has frequently been used to distinguish among populations, in particular in species with strong female philopatry. In such cases, populations are expected to diverge rapidly for hypervariable region I markers because of the smaller effective population size and thus increased genetic drift. This rapid divergence leads to the accumulation of mutations exclusively found in one population, which may serve as diagnostic single nucleotide polymorphisms (SNPs). To date, diagnostic SNPs distinctive to Sumatran orangutan populations have not yet been described. However, given the continuously declining numbers of Sumatran orangutans, this information can be vital for effective conservation measures, especially regarding reintroductions of orangutans in rehabilitation centers. Phylogenetic analyses of 54 samples of Sumatran orangutans from nine sampling sites with good provenance, we found five major clades and a total of 20 haplotypes. We propose a total of 52 diagnostic SNPs that are specific to Sumatran orangutan populations. Data can be used to develop restriction fragment length polymorphism assays to carry out genetic assignments using basic laboratory equipment to assign Sumatran orangutan to their population of origin.
Ecology and Conservation of the Endangered Banteng (Bos javanicus) in Indonesia Tropical Lowland Forest Dede Aulia Rahman; Riki Herliansyah; Puji Rianti; Ujang Mamat Rahmat; Asep Yayus Firdaus; Mochamad Syamsudin
HAYATI Journal of Biosciences Vol. 26 No. 2 (2019): April 2019
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (916.643 KB) | DOI: 10.4308/hjb.26.2.68

Abstract

Banteng, Bos javanicus, as wild cattle is a vital and importance source of germplasm in Indonesia. Various human activities currently threaten their conservation status. Nonetheless, no long-term monitoring programmes are in place for this species. Using distribution point and statistical analysis based on 46,116 camera trap days from December 2015 to January 2017, we aimed to provide habitat preferences, activity patterns and ecological data for banteng population in Ujung Kulon National Park (UKNP). It is the largest population of banteng in Indonesia and is living in a limited habitat area. According to the best occupancy model, the most suitable areas for this species were the secondary forest located at the center portion of UKNP. The presence of the invasive cluster sugar palm, Arenga obtusifolia, in dry season provides additional alternative food for banteng when its main food is scarcer in the forest. Banteng was cathemeral all year round, with the proportion of cathemeral records and the recording rate did not change with the protection of the level area, moon phase or season. To reduce the probability of encountering predators, banteng avoided the space use of dholes. Selection and avoidance of habitats was stronger than avoidance of the predator activity areas. Habitat competition from domestic cattle which grazed illegally in the national park appears to be a problem to the species since zoonosis appears from domestic cattle to banteng. Therefore, effective law enforcement and an adequate conservation strategy are required to eliminate the impacts of both direct and indirect threats.
Application of Environmental DNA (eDNA) Metabarcoding Method to Identify Threatened Sulawesi Mammal Based on 12S rRNA Gene Bambang Suryobroto; Ahmad Abdul Jabbar; Puji Rianti
HAYATI Journal of Biosciences Vol. 29 No. 1 (2022): January 2022
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.29.1.114-121

Abstract

Species detection and identification is a crucial steps in biodiversity assessment. Traditional methods are often invasive and resource intensive. The number of studies demonstrating successful of eDNA metabarcoding approach in species identification has increased rapidly in recent years. Some of large terrestrial mammals have reportedly utilize natural salt licks as a source of minerals in the diet and its genetic material left in the environment can be used to identify species from this site. An eDNA metabarcoding protocol had been carried out to identify Sulawesi mammals from Adudu natural salt-licks, Nantu Wildlife Reserve, Gorontalo. Environmental DNA were extracted from water samples, Amplicon libraries were prepared by PCR amplification and Illumina MiSeq high throughput sequencing. Reads processing and taxonomic assignment carried out in two bioinformatics packages, PipeCraft-1.0 and OBITools-2.11. Two endangered Sulawesi mammals species had been identified, i.e. lowland anoa (Bubalus depressicornis) and babirusa (Babyrousa babyrussa). The accuracy of mammal species identification using eDNA metabarcoding is affected by rigorous experimental procedures, DNA marker reliability, and availability of reference sequence database.
Autentikasi Produk Olahan Ikan Hiu Komersial menggunakan Teknik Species-Specific DNA Mini-barcodes.: Authentication of Commercially Shark Products Using Species-Specific DNA Mini-barcodes Techniques Asadatun Abdullah; Ari Elisa Ratih; Shabrina Aulia; Puji Rianti; Tati Nurhayati; Agoes Mardiono Jacoeb
Jurnal Pengolahan Hasil Perikanan Indonesia Vol 23 No 2 (2020): Jurnal Pengolahan Hasil Perikanan Indonesia 23(2)
Publisher : Masyarakat Pengolahan Hasil Perikanan Indonesia (MPHPI)

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.17844/jphpi.v23i2.32226

Abstract

Pemanfaatan ikan hiu sebagai bahan baku produk olahan perikanan dapat menyebabkan berkurangnya populasi ikan hiu yang juga rentan akan kepunahan. Ikan hiu pada umumnya diperdagangkan dalam bentuk sirip, daging ikan yang diasinkan dan direbus, minyak ikan serta sebagai bahan subtitusi pada pakan hewan sehingga proses identifikasi menggunakan metode berbasis morfologi dan meristik sulit dilakukan. Sebagai alternatif proses autentikasi bahan baku produk olahan ikan hiu adalah menggunakan teknik DNA mini barcodes. Penelitian ini bertujuan untuk merancang dan mengaplikasikan primer DNA mini barcodes yang spesifik terhadap tiga species hiu terancam punah yang masuk dalam daftar CITES (Sphyrna lewini, Alopias pelagicus, Carcharhinus falciformis) serta mengaplikasikan pada berbagai produk olahan ikan hiu. Tahapan penelitian yang dilakukan meliputi koleksi sampel produk olahan perikanan, perancangan primer spesifik, isolasi DNA, pengujian kualitas dan kuantitas DNA, amplifikasi DNA, dan sekuensing. Berbagai produk olahan komersial berhasil diamplifikasi oleh primer spesifik yaitu pada target 300 pb (S. lewini), 285 pb (A. pelagicus) dan 352 pb (C. falciformes). Hasil sekuensing DNA sampel menunjukkan bahwa spesies teridentifikasi adalah S. lewini, A. pelagicus, C. falciformes dan Hemigaleus microstoma dengan kemiripan 99-100%. Hal tersebut menunjukkan bahwa masih terdapatnya pemanfaatan ikan hiu yang dilindungi secara ilegal, sehingga perlu penerapan regulasi yang lebih ketat untuk melestarikan spesies-spesies hiu yang terancam kepunahannya.
Profil DNA Forensik pada Barang Bukti Dua Kasus Pembunuhan di Indonesia PUJI RIANTI; ELISA CRISTIN; PUTUT TJAHJO WIDODO
Jurnal Sumberdaya Hayati Vol. 4 No. 2 (2018)
Publisher : Departemen Biologi, Institut Pertanian Bogor

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.29244/jsdh.4.2.48-56

Abstract

DNA technology for profiling purposes has been used in many basic and applied science. One of the emerged applied science in genetics is it’s uses in solving crime cases. Homicide became one of highest crime cases in Indonesia. Solving its cases through DNA profiling technology using items of evidence as tool is needed. Here, we report the profiling of human DNA from several items of evidence available in the crime scene and the suspect. We used items of evidence from study cases no. 18098 and 18101, based on the legal permission of Indonesia’s National Police. We used 21 international standards of human STR markers, one sex-determining marker, one Y STR marker, and one independent Y marker to developed human alleles from tissue and blood stains left and/or shred on the victims, soap bottles, knifes, victim’s clothes and ropes as well as the buccal swab of the crime suspect. Our alleles identification matched between the victim and the crime suspect in both cases with the accuracy of DNA profiles compatibility at 99.99%. Detection of DNA profiling is depending on the evidence and time of storage which are influence by environment that can lead to the process of decayed and/or contaminated.
Co-Authors Agoes Mardiono Jacoeb Ahmad Abdul Jabbar Alexander Nater Ari Elisa Ratih Asadatun Abdullah Asep Yayus Firdaus Bambang Suryobroto DEDE AULIA RAHMAN Dondin Sajuthi DYAH PERWITASARI -FARAJALLAH ELISA CRISTIN Joko Pamungkas Michael Krützen Mochamad Syamsudin PUTUT TJAHJO WIDODO Riki Herliansyah Shabrina Aulia TATI NURHAYATI Tri Atmowidi Ujang Mamat Rahmat