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INDONESIA
HAYATI Journal of Biosciences
Published by Institut Pertanian Bogor
ISSN : 19783019     EISSN : 20864094     DOI : -
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Earth & Planetary Sciences
HAYATI Journal of Biosciences (HAYATI J Biosci) publishes articles and short communication in tropical bioscience fields such as development, biotechnology, biodiversity and environmental issues. HAYATI J Biosci covers wide range of all life forms topics including virus, microbes, fungi, plants, animal and human. HAYATI J Biosci has been also indexed/registered in Crossref, DOAJ, CABI, EBSCO, Agricola and ProQuest.
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Articles 15 Documents
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Search results for , issue "Vol. 29 No. 4 (2022): July 2022" : 15 Documents clear
Overexpression of Heat Shock Cognate Protein 71 kDa and Pyruvate Dehydrogenase in the Brain Tissue at the Early Stage of High Fat Diet Consumption Yan-Fen Lee; Xuan-Yi Sim; Mohd Nazri Ismail; Lay-Harn Gam
HAYATI Journal of Biosciences Vol. 29 No. 4 (2022): July 2022
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.29.4.499-506

Abstract

High-fat diet (HFD) increases the risk of obese, while obesity increases the prevalence of metabolic syndrome and non-communicable diseases. Therefore, it will be interesting to evaluate the changes in metabolic parameters and brain profile upon the early consumption of HFD. In this study, a total of 12 Sprague-Dawley male rats were divided into two groups (n = 6), each group was fed with normal diet and HFD (39% of total calories from fats), respectively, for 6 weeks consecutively. The body weight, blood glucose, cholesterol and triglyceride values were measured. Furthermore, the brain and visceral adipose tissues were harvested at the end of the experiment. Protein was extracted from the brain tissue, and the protein extracts were separated by using two-dimensional gel electrophoresis and analyzed by liquid chromatography tandem mass spectrometric analysis (LC/MS/MS). In terms of food calorie, the rats fed with HFD consumed more energy than the rats fed with normal diet. Nevertheless, the blood triglyceride and cholesterol, and the visceral adipose tissue of both the HFD and normal diet fed rats were indifferent. At the molecular level, overexpression of stress proteins, namely heat shock cognate protein 71 kDa (Hsc70) and pyruvate dehydrogenase were detected in brain tissue of HFD group. These results suggest that HFD intake causing significant change in brain proteins profile at the early phase of its consumption when no clear metabolic changes were observed. This showed that the brain was affected by HFD.
Ethanol Productivity of Ethanol-Tolerant Mutant Strain Pichia kudriavzevii R-T3 in Monoculture and Co-culture Fermentation with Saccharomyces cerevisiae Nurfadhilla Rahmadhani; Rika Indri Astuti; Anja Meryandini
HAYATI Journal of Biosciences Vol. 29 No. 4 (2022): July 2022
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.29.4.435-444

Abstract

We previously developed ethanol-tolerant P. kudriavzevii R-T3 (P.ku R-T3) mutant from its parental strain P.ku R-WT by evolutionary adaptation method. Hence, we further analyze the ethanol productivity of the particular isolates in a monoculture and co-culture with industrial yeast Saccharomyces cerevisiae BY4741 at various inoculum ratio. Based on the spot assay, R3 mutant yeast showed better cell viability under 10% ethanol stress than the wild type, potentially due to the high expression level of PKINO1 gene involved in the synthesis of inositol. In the monoculture fermentation, S. cerevisiae could use glucose, while P.ku could use mixed glucose and xylose as carbon sources for ethanol fermentation. P.ku R-T3 performed the most potential ethanol kinetics parameters, including the highest ethanol production (10.10 g/L), ethanol productivity (0.21 g/L/h), and fermentation efficiency (84.36%). Upscaling the inoculum of P.ku R-T3 by ten times resulted in 10% higher ethanol production. However, the highest substrate utilization rate did not indicate an increase in ethanol production. Indeed, P.ku R-T3 showed a low mixed substrate use but produced higher ethanol production than S. cerevisiae, as much as 21-31%, depending on the initial inoculum. Interestingly, the co-culture of P.ku R-T3 and BY4741 did not substantially produce higher ethanol production than the monoculture technique. About 30% reduction of ethanol production was found by co-culturing BY4741 with P.ku R-T3 than P.ku R-T3 alone. Taken together, the monoculture fermentation of P.ku R-T3 remains the promising fermentation technique than that of the co-culture with industrial yeast S. cerevisiae.
Component Analysis of Propolis from Papua New Guinea Ryo Miyata; Mikina Matsui; Shigenori Kumazawa
HAYATI Journal of Biosciences Vol. 29 No. 4 (2022): July 2022
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.29.4.526-530

Abstract

Propolis is an aggregate of functional components found in plant resins and has been reported to exhibit valuable biological activities. This study investigated the components and antioxidant activity of propolis from Papua New Guinea. In component analysis, seven known compounds, 6-deoxyhaplopinol (1), 5-formylguaiacol (2), trans-caffeic acid (3), cis-caffeic acid (4), trans-ferulic acid (5), trans-p-coumaric acid (6), and L-kaempferitrin (7), were isolated and identified from Papua New Guinean propolis. The structure of 1 was confirmed by comparing the 13C NMR chemical shifts of the isolated and synthesized compounds. Based on component analysis, Papua New Guinean propolis may be a new type of propolis. The EtOH extracts of Papua New Guinean propolis exhibited antioxidant activity comparable to that of Baccharis and Populus propolis. This study demonstrated the potential of Papua New Guinean propolis in human health maintenance.
Gynura procumbens Adventitious Root Extract Altered Expression of Antioxidant Genes and Exert Hepatoprotective Effects Against Cadmium-Induced Oxidative Stress in Mice Sugiharto; Dwi Winarni; Anjar Tri Wibowo; Ufairanisa Islamatasya; Idqa Nurtri Bhakti; Nabilatun Nisa; Boon Chin Tan; Yosephine Sri Wulan Manuhara
HAYATI Journal of Biosciences Vol. 29 No. 4 (2022): July 2022
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.29.4.479-486

Abstract

Exposure to cadmium (Cd) could increase of reactive oxygen species (ROS) and changes in expression of antioxidant genes. Gynura procumbens is a medicinal plant that is rich in phenolic and flavonoid compounds. The aimed of study to evaluate the hepatoprotective effect of G. procumbens adventitious root (GAR) extract against Cd toxicity, especially expression rate of hepatic antioxidant genes. Twenty-five male mice were treated as follows: P1 (control), P2 (Cd100mg/L), P3 (GAR100mg/L + Cd100mg/L), P4 (GAR200mg/L + Cd100mg/L), and P5 (GAR300mg/L + Cd100mg/L). The samples (blood and liver) were collected for analysis of malondialdehyde (MDA) levels, superoxide dismutase (SOD) and catalase (CAT) activities, and their relative gene expression were determined. The hematological assay showed Cd-treated administered with GAR extract increased the number of red blood cells (RBC), haemoglobin concentration (HGB), hematocrit (HCT), mean corpuscular volume (MCV), and mean corpuscular haemoglobin (MCH), but reduced the level of alanine aminotransferase (ALT) and aspartate aminotransferase (AST). In addition, the GAR extract decreased the MDA production, but increased the activities of SOD and CAT. These enzymatic activities were positively correlated with their respective gene transcripts. Our study revealed that GAR extract administration showed marked hepatoprotective effects against Cd-induced oxidative stress.
Molecular Detection of Hemagglutinin Gene Fragment of Avian Influenza Virus H9 Subtype Obtained from Poultry Commercial Farm with Prominent Symptom of Decreased Egg Production Niken Respati Maharani; Heru Susetya; Michael Haryadi Wibowo
HAYATI Journal of Biosciences Vol. 29 No. 4 (2022): July 2022
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.29.4.531-539

Abstract

Avian influenza virus H9N2 subtype is considered a low pathogenic strain that has been reported in Indonesia since late 2016. The outbreak has caused economic losses for farmers due to the sharp drop in egg production. The evidence of the existence of AIV H9N2 has been published, but very limited information on the prominent symptom and macroscopic lesion. This research was a retrospective study of suspected avian influenza H9 subtype, obtained from layer commercial farm with recorded characteristic symptoms. Specific trachea samples were collected and further processed to be isolated, propagated using embryonated chicken egg, and then extracted the RNA for molecular detection using real-time reverse transcriptase-polymerase chain reaction (RT-qPCR). A positive result was further detected in its H-9 gene with RT-PCR technique and sequencing methods. One of five samples showed positive for RT-qPCR with CT value 30.19. Sequence analysis confirmed that the sample with characteristic macroscopic lesion could be detected in the presence of the AIV H9 subtype. Phylogenetic tree analyses revealed that this virus belongs to the China-Vietnam- Indonesia (CVI) lineage.
Morphology and Anatomy of Endemic Fish Leptobarbus melanopterus (Cyprinidae) in Danau Sentarum National Park Kapuas Hulu Regency Ari Hepi Yanti; Tri Rima Setyawati; Barrata Barrata
HAYATI Journal of Biosciences Vol. 29 No. 4 (2022): July 2022
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.29.4.487-498

Abstract

One of the endemic freshwater fishes in Danau Sentarum National Park (DSNP) is Leptobarbus melanopterus which has high economic value for both commercial and collection purpose. However, the overfishing of L. melanopterus running over decades with harmful catch tools is worried could contribute to the population decline in the future. At the same time, this species has never been cultured and fishermen catch directly in the habitat on a daily basis. This research was aimed to identify the morphological and anatomical characters of L. melanopterus. All samples were collected from three different sites in DSNP and measured its morphological and anatomical sizes manually. The results showed that the length of mandibula barbel was the distinguishing character between females and males, with loading score of 0.81. Most meristic variables showed no difference between two sexes. In terms of anatomical measurements, L. melanopterus females had larger gill sizes than males, including gill raker, gill arch and fill filament. Our findings signify the thorough morphological and anatomical sizes of L. melanopterus which are important in identifying fish stock, growth pattern and sexual dimorphism for future culture management.
Molecular Identification, GC-MS Analysis of Bioactive Compounds and Antimicrobial Activity of Thermophilic Bacteria Derived from West Sumatra Hot-Spring Indonesia Zona Octarya; Titania Tjandrawati Nugroho; Yuana Nurulita; Saryono
HAYATI Journal of Biosciences Vol. 29 No. 4 (2022): July 2022
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.29.4.549-561

Abstract

Thermophilic bacteria are a source of bioactive compounds that have many benefits for human life. One of them is as a source of antimicrobials. This research aimed to identify and characterize the promising thermophilic bacterial isolates by analyzing bioactive compounds and their potential as antimicrobial agents. Thermophilic bacteria with the code LBKURCC were taken from the collection of the Biochemistry Laboratory of the University of Riau. Forty-four purified strains of thermophilic bacteria were tested for antimicrobial ability. These thermophilic bacteria were taken from hot springs located in the Sumatra provinces of West Sumatra and Riau. Strain LBKURCC218 isolated from Rimbo Panti hot springs in West Sumatra was chosen to further investigate antimicrobials production. Isolates of hot spring bacteria that produced the highest antimicrobial were identified by comparing the similarity of the 16S rRNA gene sequences. BLAST result and phylogenetic tree showed that the selected thermophilic bacterial strain was similar to Bacillus paramicoides with the similarity index of 99.93%. Analysis of bioactive compounds of the ethyl acetate extract of liquid cultures of B. paramycoides LBKURCC218 showed the best producer of antimicrobial compounds compared to other isolates. The most identified compounds from the ethyl acetate extract were Dodecanoic acid, representing 23.62% of the total compounds, followed by 11-Dodecanoic acid at 17.84%. Ethyl acetate extract of B. paramycoides LBKURCC218 has a high inhibition zone against Escherichia coli, Staphylococcus aureus, and Candida albicans.
Evaluation of Cardiovascular Biomarkers and Lipid Regulation in Lactation Friesian Holstein at Different Altitude in West Java, Indonesia Ujang Hidayat Tanuwiria; Iin Susilawati; Didin Tasripin; Lia Budimulyati Salman; Andi Mushawwir
HAYATI Journal of Biosciences Vol. 29 No. 4 (2022): July 2022
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.29.4.428-434

Abstract

Altitude contributes and plays an important role in the development dairy cows in Indonesia. Altitude is directly related to temperature and humidity, both of which affect cardiovascular function and energy metabolism in dairy cattle. The 120 samples, consisted of 4th-5th lactation Friesian Holstein dairy cows were used in this study. The 40 samples of cattle each spread in three maintenance sites with different altitudes, namely 300 to 500 m above sea level (a.s.l.); 600-900 m a.s.l. and >1,000 m a.s.l. All the study sites located in West Java, Indonesia, to study the effect of altitude on the cardiovascular biomarker and lipid regulation in the dairy cow. Based on the result in this experiment showed that the CRP high sensitivity, H-FABP, homocysteine, and γ-Glutamyl Transpeptidase in Frisian Holstein dairy cows expressed higher levels (P <0.05) at low altitude site (300-500 m a.s.l.) than dairy cows at altitude sites higher (600-900 and >1,000 m a.s.l.), These results indicated, these compounds can be biomarkers for cardiovascular function. This study also showed, the lipid regulation also showed higher levels (P <0.05) at low altitude sites than altitude sites higher.
Adaptive Mangrove Ecosystem Rehabilitation Plan based on Coastal Typology and Ecological Dynamics Approach Aswin Rahadian; Cecep Kusmana; Yudi Setiawan; Lilik Budi Prasetyo
HAYATI Journal of Biosciences Vol. 29 No. 4 (2022): July 2022
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.29.4.445-458

Abstract

Mangrove rehabilitation has implications for important ecological, social and economic values for coastal communities. The mangroves ecosystem Karawang Regency is still under pressure due to the management and utilization that does not pay attention to the sustainability aspect. The rehabilitation plan to mangrove management must be adapted to the nature and characteristics of the habitat. This study aims to formulate technical considerations for the direction of a rehabilitation plan based on an ecological approach and the dynamics of the mangrove ecosystem. The methods used in this study were geospatial approach that integrated with field quanitative and qualitative data. The results show that the total of mangrove potential area in Karawang Regency was 19,139.53 ha, consisting of 421.95 ha (2.2%) of vegetated area and 18,717.58 ha (97.8%) of unvegetated area. We integrate mangrove typology, mangrove stand density, physical parameters, and land use as the basis for determining the direction of rehabilitation planning. In the estuarine deltaic mangrove typology, we aim at protecting with natural regeneration. In infringe areas, we recommend constructing natural coastal structures before planting. On the backward for intensive planting. Furthermore, mangroves with low density, medium density, and high density are recommended for planting, species enrichment, and protecting respectively, and on the pond with implementing the mixed mangrove-aquaculture system to bridge between rehabilitation effort and economic needs of coastal communities.
Genetic Diversity and Population Structure of Bullet Tuna (Auxis rochei) from Bali and Its Adjacent Waters Maya Agustina; Bram Setyadji; Made Pharmawati; I ketut Junitha
HAYATI Journal of Biosciences Vol. 29 No. 4 (2022): July 2022
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.29.4.507-514

Abstract

Bullet tuna (Auxis rochei) dominates the neritic tuna catch, especially from the purse seine fleet within the western and southern Indonesian waters. However, high catches can lead to stock depletion and lower genetic diversity due to possible inbreeding. Therefore, population genetic information is important in monitoring the sustainability of fish stocks and proposing an appropriate species-specific conservation strategy. This study aimed to analyze the genetic diversity, population structure, and kinship relationship of bullet tuna in Bali and its adjacent waters. Sampling was carried out in September 2020 at landing sites/ports representing the north, east, south, and west region, whereas at least 30 samples were acquired at each location. The result showed that the DNA concentration obtained could produce DNA bands with allele length ranged from 94-260 bp. Observed heterozygosity (Ho) was around 0.440-0.627. While the expected heterozygosity (He) was between 0.932-0.945. The genetic variation among population, within-population, and individuals was 0.36%, 41.04%, and 58.60%, respectively. The results of the analysis of genetic diversity between individuals in the population showed very high genetic diversity. The population structure of the bullet tuna landed in West Bali, East Bali, South Bali and North Bali is the same population stock. The kinship relationship indicates that the four populations are closely related genetically.

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