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INDONESIA
Journal of Tropical Life Science : International Journal of Theoretical, Experimental, and Applied Life Sciences
Published by Universitas Brawijaya
ISSN : 20875517     EISSN : 25274376     DOI : -
Core Subject : Agriculture, Social,
Agriculture, Biological Sciences & Forestry Environmental Science
The Journal of Tropical Life Science (JTLS) provides publication of full-length papers, short communication and review articles describing of new finding or theory in living system, cells and molecular level in tropical life science and related areas. The journal publishes articles that report novel findings of wide Tropical Life system phenomenon in the areas of biodiversity, agriculture, fisheries, health, husbandry, forestry and environmental technology. JTLS has 1 volume with 3 issues per year.
Arjuna Subject : -
Articles 815 Documents
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The Identity of the Herb Todda–Vaddi in Van Rheede’s Hortus Malabaricus Daniel, Jisha; Santhoshkumar, Ettickal Sukumaran; Rajendraprasad, Madhavan; Decruse, Sabarimuthan William
Journal of Tropical Life Science Vol 11, No 3 (2021)
Publisher : Journal of Tropical Life Science

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11594/jtls.11.03.03

Abstract

The ambiguity on the botanical identity of Todda-vaddi in Rheede’s Hortus Malabaricus is clarified as Biophytum reinwardtii (Zucc.) Klotzsch here. A detailed description, photographs and other relevant notes are provided.   
Immunomodulatory Activity of Methanol Leaf Extract of Neem (Azadirachta indica Juss) Against Suppressor and Proinflammatory Molecules Supriyanto, Supriyanto; Widjanarko, Simon Bambang; Rifa'i, Muhaimin; Yunianta, Yunianta
Journal of Tropical Life Science Vol 11, No 3 (2021)
Publisher : Journal of Tropical Life Science

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11594/jtls.11.03.07

Abstract

Neem plant is rich in bioactive constituents, which make it massively discussed the treatment of various diseases. A study on the immunomodulatory activities of neem is given here. This current work aimed to investigate the effects of neem leaf extract on immunocompetent cells. In vivo experiment was carried out using mice (Mus musculus)  induced with DMBA, comprising positive control, negative control, and treatments of neem leaf extracts (250, 500, and 1000 ppm). Data obtained from flow cytometric analysis were evaluated using BD Cellquest ProTM software, then statistically analyzed in SPSS version 21. Parametric analysis in one-way ANOVA was performed at a significance level of 5%. The significant difference was compared in the Duncan test. The results showed that administration of neem leaf extracts significantly affected the expression of CD4+, CD8+, CD25+, CD62L, IL-10, and IL-17 cells .Neem leaf extract has immunomodulatory activities by increasing pressure molecules and decreasing pro-inflammatory molecules
Mutation Analysis and Single Nucleotide Polymorphism of TP53 Gene in Breast Cancer in East Java Radhiyah, Rizqa; Ardana, I Kade Karisma Gita; Wisnubroto, Wisnubroto; Listyorini, Dwi; Susanto, Hendra
Journal of Tropical Life Science Vol 11, No 3 (2021)
Publisher : Journal of Tropical Life Science

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11594/jtls.11.03.12

Abstract

The Incidence of Indonesia breast cancer case in 2018 was reported at 20.7% or 160,653 in number. The factors that caused breast cancer is TP53 gene mutation and Single Nucleotide Polymorphism (SNP). This study aimed to determine the mutation and Single Nucleotide Polymorphism (SNP) of TP53 gene in breast cancer. Samples of this study were 9 people chosen based on a purposive technique. The methods include total DNA isolation, DNA quantification, PCR, and sequencing. The results of the sequencing were then analyzed using alignment and blast. The SNP is browsed by the SNP finder on NCBI both followed by protein modeling. The results of this study indicate the existence of mutation in the exon and intron regions. Substitution of Guanine (G) to base Adenine (A) is occur in codon 496 which is a coding region. SNP was also obtained in exon of sample 12. The conclusion of this study is breast cancer can be caused by mutations that occur in the exon and altered the structur of protein structure, so then affect the binding affinity between p53 and its target domain. Tp53 gene mutation is not the only cause of breast cancer staging development, there are other genes that also contribute to the development of cancer stage. In addition, Single Nucleotide Polymorphism in the TP53 gene can be used as a predisposition marker of breast cancer that has potential to be inherited
Complex Compound with Transitional Metal of Akway Bark (Drimys piperita Hook f.) as Low Molecular Weight Scavenging Antioxidant: a Computational Study Hutasoit, Hostalige; Djoko, Dionysius Joseph; Sumitro, Sutiman B; Widjanarko, Simon Bambang
Journal of Tropical Life Science Vol 11, No 3 (2021)
Publisher : Journal of Tropical Life Science

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11594/jtls.11.03.02

Abstract

Akway (Drimys piperita Hook f.) was known as an endogenous plant of Indonesia. This plant was investigated as free radical scavenger based on paramagnetic properties. This study aimed to identify the bioactive compound and the role of Fe metals ions to enhance the free radical scavenger capacity as Low molecular weight antioxidant (LWMA) of akway. This study was designed by ultra-performance liquid chromatography (UPLC) coupled with ultra-high-resolution time of flight-mass spectrometry detector (TOF-MS), docking (Pyrex and Discovery Studio 2016 Client) and pharmacokinetic properties prediction (SwissADME). UPLC-TOF-MS analysis showed that herbal akway bark has five molecular formula (C4H3N10O21-, C14H19N4O91-, C4H7N6O51-, C15H28NO31+, and C23H32NO71+). The docking was illustrated the complex binding akway formula with Fe and its role as a metal donor and metal acceptor. It also confirmed on pharmacokinetics properties prediction which molecular compounds of akway have aqueous solubility. It meant the herbal akway bark complexed to Fe could be a low molecular weight antioxidant and it could be escalated free radical scavenger capacity.
Niche Overlap between Pongo pygmaeus wurmbii and Helarctos malayanus Raffles within Small Scale Habitat in Punggualas Area, Sebangau National Park Panda, Adventus; Krestina, Widya
Journal of Tropical Life Science Vol 11, No 3 (2021)
Publisher : Journal of Tropical Life Science

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11594/jtls.11.03.08

Abstract

The Sebangau National Park is a major stronghold for Bornean Orangutan (Pongo pygmaeus wurmbii) ranging from 6000 – 9000 individuals. In comparison with Bornean Orangutans, very little ecological fieldwork has been conducted to investigate sun bear biology, and there have been no thorough surveys of distribution or population densities. Thus, this study aimed to investigate the basic information on niche overlap between these two endangered species, specifically to quantify their relationship within the small-scale habitat in Punggualas area, SNP. Data was collected and measured during 15 – 21 June 2019; using line transects methods. A total of 6580 m was walked along 8 consecutive transects. Bear and aging sign follow Augeri protocols. A total 18 printed mark-claw and 17 Orangutan nests was measured according to the mentioned methodology.  The relationships between signs use binary logistic regressions (StatPlus for Mac) and PCA model (using R), while interspecific relationships use Co-Occurrence modeling, ESP for Windows. The results showed that there is no difference between bear sign and orangutan nest (c2: 26.249; df :1, p-value : 0.001); While the results on habitat selection between transects is failed to reject the null hypothesis (c2 = 0.29; df :1, p-value : 0.490). The Mann-Whitney U test, also confirmed no distinctive overlap between the Orangutan and the Sun Bear (Z: 0.84; p-value: 0.40). The co-occurrence simulations also revealed significant results (C-Score = 1.00), by means both target animals co-existed in the habitat.  Obviously, the Orangutan and Sun Bear occupy the same habitat. There is no distinctive overlap between them in terms of tree species selection and having a close interrelationship in terms of feeding ground, whereas the fruiting is not available. The only distinctive difference is that the Bear sign was tend hindering waterlogged terrain.
Antioxidant Capacity, Phytochemical Profile, and Clustering of Pomegranate (Punica granatum L.) Peel Extracts Using Different Solvent Extraction Rafi, Mohamad; Wulansari, Laela; Septaningsih, Dewi Anggraini; Purnomo, Tsania Firqin; Auliatifani, Reza; Khaydanur, Khaydanur; Ilmiawati, Auliya; Yulianti, Wina; Nengsih, Nunuk Kurniati; Suparto, Irma Herawati; Kusuma, Wisnu Ananta
Journal of Tropical Life Science Vol 11, No 3 (2021)
Publisher : Journal of Tropical Life Science

Show Abstract | Download Original | Original Source | Check in Google Scholar

Abstract

Pomegranate has valuable nutritional content and contains various bioactive compounds, one found in the fruit's peel. The utilization of these bioactive compounds could be used as herbal medicines and supplements, such as antioxidants. This study aimed to determine the antioxidant capacity, phytochemical profile, and pomegranate peel extract grouping using different extracting solvents. The three extracting solvents used were water, 70% ethanol, and ethanol p.a. Antioxidant capacity of the three extracts was measured using the DPPH and CUPRAC methods. We also determined the total phenolic and flavonoid levels and the TLC fingerprint analysis and FTIR spectrum of the pomegranate peel extracts. The 70% ethanol extract owned the largest antioxidant capacity than the other two extracts with a value of 358.67 and 2981.59 µmol trolox/g dried sample using the DPPH and CUPRAC methods, respectively. The three pomegranate peel extracts' total phenolic and flavonoid levels ranged from 287.26–1068.81 mg GAE/g dried sample and 0.24-0.75 mg QE/g dried sample. TLC fingerprint analysis of pomegranate peel extract yielded 2, 6, and 6 bands for water extract, 70% ethanol, and p.a ethanol, respectively. The three extracts can be grouped based on FTIR spectrum data using principal component analysis using three principal components with a total variance of 93%. The results obtained show that using different extracting solvents provides different antioxidant capacities and phytochemical profiles.
Biosorption of Cadmium by fungi isolated from Bharalu river, Assam Deka, Dipannita; Bora, Pinky; Devi, Nameirakpam Nirjanta; Chabukdhara, Mayuri
Journal of Tropical Life Science Vol 11, No 3 (2021)
Publisher : Journal of Tropical Life Science

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11594/jtls.11.03.04

Abstract

Heavy metal pollution in the aquatic ecosystem poses a serious threat to the human health and aquatic biodiversity around. There is urgent need to remediate heavy metals contaminated wastewater through eco friendly ways. Fungi and other microorganisms have been reported to have promising potential to remove heavy metals from wastewater through biosorption. Thus the present work aimed to isolate tolerant fungal species from different sites of a polluted river Bharalu in Assam. After preliminary screening, out of a total of 15 fungal isolates obtained, 4 isolates Aspergillus niger, Aspergillus flavus, Aspergillus fumigates and Colletotrichum gloeosporioides were selected for further study. Tolerance limit of the isolates for Cadmium (Cd) was carried out at concentrations ranging from 100 ppm to 1000 ppm. Results showed that the maximum tolerance was observed in Colletotrichum gloeosporioides (approx. 8.8 mm), followed by Aspergillus flavus (approx. 5.8 mm) at 400ppm. The biosorption efficiency at 400ppm revealed that the maximum Cd concentration was absorbed by fungal biomass of Colletotrichum gloeosporioides (12.83 mg/g) and the minimum by Aspergillus niger (3.91 mg/g). Molecular identification was carried out followed by PCR amplification of the fungal biomass showing highest absorption. The sequence obtained was submitted in the GenBank using BANkIt with accession number-MN714368 which showed high similarities with Colletotrichum gloeosporioides. This results indicated that fungus are promising and potential sources for metal biosorption and detoxification.
In silico Characterization of UGT74G1 Protein in Stevia rebaudiana Bertoni Accession MS007 Khan, Afiqah Rahmatullah; Mokhtar, Nor Iwani; Zainuddin, Zarina; Samsulrizal, Nurul Hidayah
Journal of Tropical Life Science Vol 11, No 3 (2021)
Publisher : Journal of Tropical Life Science

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Abstract

Stevia rebaudiana is being promoted as an alternative sweetener in particular for diabetic and obese patients due to its low-calorie property. The steady demand in the market for high-quality stevia extracts presents a challenge for enhanced production of steviol glycosides that are safe for human consumption. This study characterized the structure and content of gene involved in the production of UGT74G1 protein for S. rebaudiana accession MS007 through in silico analysis using transcriptome dataset of stevia MS007.  Homologous search using BLASTp show high similarity to Q6VAA6 RecName: Full=UDP-glycosyltransferase 74G1 (S. rebaudiana) as the top hit sequences. InterPro family and domain protein motif search revealed the presence and entry of IPR002213 and IPR035595. The construction of the phylogenetic tree was done by selecting 19 out of 102 protein sequences from BLASTp. The phylogenetic analysis showed the same protein family which is Asteraceae. ProtParam Ex-Pasy, PSIPRED and Phyre2 computed the primary, secondary, and tertiary structures for UGT74G1 protein. The UGT74G1 predicted tertiary structure scored 100.0% confidence by the single highest scoring template and coverage of 96%. The model has dimensions (Å) of X: 57.609, Y: 70.386, and Z: 58.351. Outcomes of this research will help to enhance the understanding of UDP-glycosyltransferase 74G1 (S. rebaudiana MS007) characteristic and enhance target identification processes to improve understanding of protein-protein interaction in S. rebaudiana MS007.
Phylogenetic Study of Bufonidae (Amphibia: Anura) from Sumatera and Asia Based on Cytochrome B Gene Tjong, Djong Hon; Roesma, Dewi Imelda; Indra, Silvia
Journal of Tropical Life Science Vol 11, No 3 (2021)
Publisher : Journal of Tropical Life Science

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Abstract

Bufonidae is widely distributed amphibian family around the world, including Indonesia (Sumatra) and Asia. Sumatra is an island which has separated because of sea level increase and create gene flows barrier for amphibian in Sumatra and Asia. The purpose of this research is to analyse Bufonidae phylogenetic which exist in several locations in Sumatra and Asia based on gene cytochrome b analysis. Samples were collected from six localities in West Sumatra. DNA extraction and amplification has been done in Genetics and Cell Biology Laboratory, Andalas University, whereas DNA sequencing were analyzed at MacroGen USA DNA Sequencing Laboratory, South Korea. About 14 tissue samples of Bufonidae from West Sumatra has been analyzed. The relationship of Bufonidae phylogenetics in Sumatra and Asia were divided into three main clusters. Duttaphrynus melanostictus in Sumatra is closer to Duttaphrynus melanostictus from India with 0,3-0,5% sequence divergence and it is a group of paraphyletic with Duttaphrynus melanostictus from Vietnam, Taiwan, and China.
Multi-Drug Resistance Bacteria: A Case Study in Western Peninsular Malaysia Freshwaters Suhaimi, Mohd Suardi; Yern, Kam Kar; Kamaroddin, Mohd Farizal Ahmad; Rizal, Syahidatul Fazlina Samsul; Baharudin, Syamimi Nadiah; Othman, Fatin Shahira Binti; Muhammad Hussain, Nur Roslina Peer; Hassan, Nurul Liyana; Salikan, Nurul Aqidah; Dzukhi, Nur Hidayah Mohd
Journal of Tropical Life Science Vol 11, No 3 (2021)
Publisher : Journal of Tropical Life Science

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11594/jtls.11.03.05

Abstract

The emergence of antibiotic resistant bacteria in aquatic environment has led to an increase in waterborne health risks to an alarming extent. This study attempts to investigate the population of certain antibiotic resistant strains in Peninsular Malaysia.  From the samples of 14 rivers from 7 different states in Peninsular Malaysia, a total of 203 isolates were successfully isolated. These are from rivers in Negeri Sembilan, Melaka, Selangor, Kuala Lumpur, Kedah, Kelantan and Terengganu with 35, 15, 37, 39, 24, 26 and 27 isolates, respectively. The isolates were tested for their susceptibility towards 6 broad spectrum of antibiotics which are gentamicin, ampicillin, rifampicin, chloramphenicol, tetracycline, and ciprofloxacin. A total of 117 isolates were identified to have more than 20% MAR index value with 47 of the isolates possess minimum MAR index value of 50%. Based on MAR index value, 59% of isolates are high risk threats indicating a serious emergence of antibiotic resistant bacteria in the rivers in Peninsular Malaysia. Isolates with MAR index value of more than 50% were selected for 16S rRNA gene sequencing for further identification.Based on 16s rRNA gene sequencing, the isolates are a mixture of pathogenic and commensals bacteria. This also implies that the environment especially rivers can be a reservoir for genetic jugglery

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